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The map label for this gene is xerD [H]

Identifier: 51596109

GI number: 51596109

Start: 2125870

End: 2126925

Strand: Direct

Name: xerD [H]

Synonym: YPTB1774

Alternate gene names: 51596109

Gene position: 2125870-2126925 (Clockwise)

Preceding gene: 51596108

Following gene: 51596110

Centisome position: 44.81

GC content: 46.4

Gene sequence:

>1056_bases
ATGGCAGTACGGAAGTTACCCAACGGGAAGTGGGTCTGTGATTTTTACTCAGATGGCCGTGACAGTAAGCGGGTTAGGAA
AACCTTTGTTACTCGCGGCGAGGCGATGCGCTTTGAACGTGAACAATTAGCGCAACGTGGTGATCTGGATATTGACTACA
CACCGGCAGAGACTGCCGCGCAGAGGTTAAAAACATTGGTCGGTCAGTGGTATGAACTCCACGGGCGCTCTTTGAGTGAC
GGCAAAGCAAGATTAGATAAACTTAATATCCTGTGTGATAACTTGGGCGATCCTGCTGTTGCTGATTTTGACCGGGAAGT
GTTCGCCAAATACCGCAAGCAGCGTTTAGCCGGTGAGTTTAGTCGTAAGCCAAAACACGGAATCGTTAAACCGCCAAAAG
AGGCAACGGTCAACCGCGAACATGCTTATCTGCGAGCTGTCTTTAATGAGTTGAAAAGGCTAGGGCATTGGAATCATGCG
AATCCGCTGGATGGCGTCAGGTTATTTCGTGAAAGTGAAAACGAATTAACTTTCCTTTATGAGGACGATATTAAGCGTCT
GCTGCATGAGTGTGACAGTTCCAGCAACAAAGATCTCGGCATAATCGTTCGTATCTGTCTGGCTACCGGCGCGCGCTGGA
GTGAAGCGGAGCAACTAAGACAAGCTCAGGTGATGCCAAATAAAATTACTTATATCAACACCAAGAGTAAAAAGAACCGA
ACAGTCCCTATTTCTGCGGAATTGCATAAACTTATTCCAAAGATGAAAGGGCGCTTATTCGCCAATGCCTATGACGCATT
TGGGCAAGCCATTGACCGGGCTAAACTGGTGTTACCTACCGGCCAGTTAACCCACGTTCTACGGCATACTTTCGCCAGTC
ATTTTATGATGAACGGCGGCAACATATTAGTACTACAACAAATCCTCGGGCACTCCACTATCCAAATGACCATGCGCTAT
AGCCACTTTGCACCGGATCATTTAGAAGCGGCAGTGAGTTTGAATCCATATGACCGAATACAAGACTTTAAAAAGATAGG
AAGAAATTATATATGA

Upstream 100 bases:

>100_bases
CAAGTTACACGATTTTGTTTGATGAAAGTAAAATCAAACATTGACTACTGTTTTTATATACAGTAAATAGGCCCAAGGGA
TTATTCTTGAGGACTTATTT

Downstream 100 bases:

>100_bases
ACAAAAAATATCAAGTTTTTGTCAGTTCGACATATGACGACCTGCGAGTTGAAAGGCAAGAGGTTATTCACGCGTTACTT
GAACTTGATTGTATTCCCTC

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MAVRKLPNGKWVCDFYSDGRDSKRVRKTFVTRGEAMRFEREQLAQRGDLDIDYTPAETAAQRLKTLVGQWYELHGRSLSD
GKARLDKLNILCDNLGDPAVADFDREVFAKYRKQRLAGEFSRKPKHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHA
NPLDGVRLFRESENELTFLYEDDIKRLLHECDSSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNR
TVPISAELHKLIPKMKGRLFANAYDAFGQAIDRAKLVLPTGQLTHVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRY
SHFAPDHLEAAVSLNPYDRIQDFKKIGRNYI

Sequences:

>Translated_351_residues
MAVRKLPNGKWVCDFYSDGRDSKRVRKTFVTRGEAMRFEREQLAQRGDLDIDYTPAETAAQRLKTLVGQWYELHGRSLSD
GKARLDKLNILCDNLGDPAVADFDREVFAKYRKQRLAGEFSRKPKHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHA
NPLDGVRLFRESENELTFLYEDDIKRLLHECDSSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNR
TVPISAELHKLIPKMKGRLFANAYDAFGQAIDRAKLVLPTGQLTHVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRY
SHFAPDHLEAAVSLNPYDRIQDFKKIGRNYI
>Mature_350_residues
AVRKLPNGKWVCDFYSDGRDSKRVRKTFVTRGEAMRFEREQLAQRGDLDIDYTPAETAAQRLKTLVGQWYELHGRSLSDG
KARLDKLNILCDNLGDPAVADFDREVFAKYRKQRLAGEFSRKPKHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHAN
PLDGVRLFRESENELTFLYEDDIKRLLHECDSSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNRT
VPISAELHKLIPKMKGRLFANAYDAFGQAIDRAKLVLPTGQLTHVLRHTFASHFMMNGGNILVLQQILGHSTIQMTMRYS
HFAPDHLEAAVSLNPYDRIQDFKKIGRNYI

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40332; Mature: 40201

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVRKLPNGKWVCDFYSDGRDSKRVRKTFVTRGEAMRFEREQLAQRGDLDIDYTPAETAA
CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
QRLKTLVGQWYELHGRSLSDGKARLDKLNILCDNLGDPAVADFDREVFAKYRKQRLAGEF
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHH
SRKPKHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHANPLDGVRLFRESENELTFLY
HCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEE
EDDIKRLLHECDSSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNR
HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
TVPISAELHKLIPKMKGRLFANAYDAFGQAIDRAKLVLPTGQLTHVLRHTFASHFMMNGG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHHHHCCCC
NILVLQQILGHSTIQMTMRYSHFAPDHLEAAVSLNPYDRIQDFKKIGRNYI
CEEEHHHHHCCHHEEEEHHHHCCCCHHHHHEECCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AVRKLPNGKWVCDFYSDGRDSKRVRKTFVTRGEAMRFEREQLAQRGDLDIDYTPAETAA
CCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHH
QRLKTLVGQWYELHGRSLSDGKARLDKLNILCDNLGDPAVADFDREVFAKYRKQRLAGEF
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHH
SRKPKHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHANPLDGVRLFRESENELTFLY
HCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCEEEEE
EDDIKRLLHECDSSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNR
HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
TVPISAELHKLIPKMKGRLFANAYDAFGQAIDRAKLVLPTGQLTHVLRHTFASHFMMNGG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHHHHCCCC
NILVLQQILGHSTIQMTMRYSHFAPDHLEAAVSLNPYDRIQDFKKIGRNYI
CEEEHHHHHCCHHEEEEHHHHCCCCHHHHHEECCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA