| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is 51596076
Identifier: 51596076
GI number: 51596076
Start: 2099162
End: 2101588
Strand: Reverse
Name: 51596076
Synonym: YPTB1741
Alternate gene names: NA
Gene position: 2101588-2099162 (Counterclockwise)
Preceding gene: 51596077
Following gene: 51596075
Centisome position: 44.29
GC content: 56.86
Gene sequence:
>2427_bases ATGAGTAGGAGCTTACAGTTACAGGTATTGCTCAGGGCGGTTGATCAGGCCACCCGTCCGTTTAAAGCGGTACAGGCGGC CAGCAAAGCGCTGTCCGGGGATATTCGTACCACTCAAGGCAGCATTAAAGCGCTGGAAGCTCAATCCGCTAAAATTGATG GCTTTCGTAAGGCCAGTGCTCAACTGGCCGTGACCGGGCAGGCGCTGAAAAAAGCCAAAGAAAATGCGGCGGCGCTGGCG ATCCAGTTGAGAAACACCGCAAACCCTACCGCCCAGCAAACACGGTTAATGGAGGGGGCCAAGCGCGCGGCCTCTGACCT GCAAACCAAATACAACGGCTTGCGTCAGTCGGTGCAACGCCAGCGTGACACCCTCAATGCCAGCGGTATTTCAACCCGAA ACCTGAGCAGTGAACAGCGCCGGTTACGCAGTAGTGCAGCCGAAGCCACCGCCGCCCTGAGCCGTCAGCGGCAGGAGCTG CAACGTCTGAGCCAGCGACAGGAACGGCTTAACCGTATCAGCGCGCGTTACCAGCGCGGCCGGGCTGCTGCCGGGGCGGT ACGCAATGCCAGCGCGGTCAGTGTGGGGGTTGCCACTGCCGGGTTGTACGGAGCCGCTAGACTGATCGCGCCCGGCGTTG AGTTCGACAGCCAGATGTCTGGTACTCAGGCTATTTTAGGTCTGGATAAAAAAGACGCAAAACTGGCGGCCATTCGCCAG CAAGCGCGAGATATCGGCGGGTCAACCGCGTTTTCCCCAACTGACGTGGCACGAACCCAAGACACGCTGGCCCGTTCCGG TTATGACGCTGACGCCATTCTGGCCGCCACTGCGCCAACAGTGAATCTGTCGCTGGCCTCCGGTCTTGATATTGCCGAAG CGGCCGACATTGTGACTAATATGCAATCGGCCTTTAACCTGCCCCTCGACCAGATACAGCGCGTGTCTGACGTGATGGCG AAAGGCTTTACCAGTTCGAACACCAACCTGTCAGAACTGGGTGAGGCCATGAAATATGTGGCACCAATTGCCGAGGCGGC CGGGGCCAGTATTGAAGATACTACCGCGCTGCTTGGGGTGCTGGCCGATAATGGCATTAAAGGCAGTATGGCCGGGACCA GTACCAGTGCGGTATTTAGCCGATTACAGGCCCCGCGCGGCGTGGCACCGGTGGCACTGCGTGAATTGGGTATCACCACT CGCGACAGCAAAGGCAACATGTTGCCGGTAGAGAAAATACTCAAAGATATCAGTCAGTCATTTAAAAAGAACAAGTTAGG CACTGCGCAGCAAGCCGAATACCTGAAAGTTATTTTTGGTGAGGAGGCGATGAAAGGCGCAGTGAAACTGGTGGCTGCTG CCGGTAATGGCAAGCTGGCCGAGAAGAAAGGCAAGCTGGTACAGGCCGAGGGGACAGCCGAAGCAATTGCTGCTGTCAAA ATGGATAACCTTGATGGTGACTTGAAAAACCTGACGTCGGCATGGGAAGACTTGCGTATTGAAGTCTTTGAAACGCAAGA TTCCGCTCTGCGTAAACTGACCGTCACCGCAACCGGCTGGCTGATTAAGGCCGCTGACTGGGCAAAGAAAAACCCGGAGC TGGTCGCGACTCTCACCAAAGTGACCGGTGCGGCGCTGGCATTGATCGGCGGGCTGGGTGCGTTGGGGCTGATTGCATGG CCGGTCATGACCGGGTTTAACCTGCTGCTGGCCGGGGCCGGGTTGTTGAGTACCGGCTTTTCTCTGATGGCCGGAACTAT TGCCGCCGCGCTCACGGCGCTAACATGGCCGATAGTGGCGGTGGTCGCGGCCATTGTTGCTGGCGCGCTGCTTATCCGTA AATACTGGGAGCCTATCAGCGCCTTTATTGCTGGTGTGGCTGAGGGGTTTATGGCCGCAATGGGGCCGGTCAGTGCTGCT TTTGAACCGCTTAAACCGGTATTCGCGTGGTTTAGTGACAAGGTGAAGCAACTGGCGAACTGGTTCGCTGACCTGATCCG GCCAGTAAAAGCCACACAGGAAACATTAGACCGGGCGACCAACGCAGGTAAAGTCTTTGGTGAGGGGCTGGCGGCGGCGC TCTGTCTGCCGATGAATGCGCTAAATACCTTGCGCGCTGGCATTGACTGGGTGCTGGAAAAACTTGGCATTATCGATACT AAGTCGAACGATCTGGCCGACAAAATCCCAGATGAGCCGCGCTACGGTTACGGCTATGGGACGAGTGGTTGGTCTGGCGG CTACCAACCCGTCACCGCCAATACGGGTACCACCATTGTCGATAGCAGTGTGACCACCAATGACATCAACATCAACATTC CACCGGGCATGAGCCGACAGGATGCTGAAAAAATGATGACGGATGCCCTTGCCAAAAATGAACGCGACAAACGCGCCCGC CAACGCGGCCAGATGGAGAATGATTAA
Upstream 100 bases:
>100_bases GCCATCTTTCACTGGCCGCCCTCGGAGTGTTGGGGGATGTACCTCACCGAGCTGGTGCGCTGGCGTCATAAAGCCCTGTT ACGCAGTGGAGCCGTAAACA
Downstream 100 bases:
>100_bases TGATGCTATCACTGGGTTTATTTGTGTTTATGCTGCAAACCACGCCTTACCAAAGCATGAGCCGCAATATTGATTACCGC TGGCCGACCAACAGCCGGGT
Product: bacteriophage P2 tail protein gpT
Products: NA
Alternate protein names: Phage Protein; Phage-Related Tail Protein; Tail Tape Measure Protein; Tail Length Tape Measure Protein; Prophage Pi3 Protein; Phage-Related Tail Transmembrane Protein; Phage Related Protein; Phage Tail Tape Measure Protein Family Core Region; Phage Tail Tape Measure Core Region; Phage Tail Fiber Protein; Tape Measure Protein; Phage Tail Protein; Phage-Like Protein; Phage Minor Tail Protein; Bacteriophage Tail Protein; Tail Protein Prophage; Truncated PhiSLT; Phage Tail Like Protein; Bacteriophage Tail Protein T; Minor Tail -Like; Bacteriophage P2 Tail Protein GpT; Phage Tail Tape Measure Protein Family; Tapemeasure Protein; Bacteriophage Tail Fiber Protein T; Bacteriophage-Related Protein; Bacteriophage Tape Measure Protein; Phage Tail Length Tape-Measure Protein; Tape Measure Protein Tmp; Phage Tail; Phage Protein Tail Length Tape Measure Protein; Tail Protein; Bacteriophage P2 Tail Protein GPT; Family Phage Tail Tape Measure Protein; Myosin Heavy Chain Striated; Prophage Tail Length Determinator; Phage Tail Tape Measure Protein Core Region; Phage Tail-Like Protein; Tail Fiber Protein T; Phage Tail Tape Measure Protein TMP; Phage Tape Measure Protein
Number of amino acids: Translated: 808; Mature: 807
Protein sequence:
>808_residues MSRSLQLQVLLRAVDQATRPFKAVQAASKALSGDIRTTQGSIKALEAQSAKIDGFRKASAQLAVTGQALKKAKENAAALA IQLRNTANPTAQQTRLMEGAKRAASDLQTKYNGLRQSVQRQRDTLNASGISTRNLSSEQRRLRSSAAEATAALSRQRQEL QRLSQRQERLNRISARYQRGRAAAGAVRNASAVSVGVATAGLYGAARLIAPGVEFDSQMSGTQAILGLDKKDAKLAAIRQ QARDIGGSTAFSPTDVARTQDTLARSGYDADAILAATAPTVNLSLASGLDIAEAADIVTNMQSAFNLPLDQIQRVSDVMA KGFTSSNTNLSELGEAMKYVAPIAEAAGASIEDTTALLGVLADNGIKGSMAGTSTSAVFSRLQAPRGVAPVALRELGITT RDSKGNMLPVEKILKDISQSFKKNKLGTAQQAEYLKVIFGEEAMKGAVKLVAAAGNGKLAEKKGKLVQAEGTAEAIAAVK MDNLDGDLKNLTSAWEDLRIEVFETQDSALRKLTVTATGWLIKAADWAKKNPELVATLTKVTGAALALIGGLGALGLIAW PVMTGFNLLLAGAGLLSTGFSLMAGTIAAALTALTWPIVAVVAAIVAGALLIRKYWEPISAFIAGVAEGFMAAMGPVSAA FEPLKPVFAWFSDKVKQLANWFADLIRPVKATQETLDRATNAGKVFGEGLAAALCLPMNALNTLRAGIDWVLEKLGIIDT KSNDLADKIPDEPRYGYGYGTSGWSGGYQPVTANTGTTIVDSSVTTNDININIPPGMSRQDAEKMMTDALAKNERDKRAR QRGQMEND
Sequences:
>Translated_808_residues MSRSLQLQVLLRAVDQATRPFKAVQAASKALSGDIRTTQGSIKALEAQSAKIDGFRKASAQLAVTGQALKKAKENAAALA IQLRNTANPTAQQTRLMEGAKRAASDLQTKYNGLRQSVQRQRDTLNASGISTRNLSSEQRRLRSSAAEATAALSRQRQEL QRLSQRQERLNRISARYQRGRAAAGAVRNASAVSVGVATAGLYGAARLIAPGVEFDSQMSGTQAILGLDKKDAKLAAIRQ QARDIGGSTAFSPTDVARTQDTLARSGYDADAILAATAPTVNLSLASGLDIAEAADIVTNMQSAFNLPLDQIQRVSDVMA KGFTSSNTNLSELGEAMKYVAPIAEAAGASIEDTTALLGVLADNGIKGSMAGTSTSAVFSRLQAPRGVAPVALRELGITT RDSKGNMLPVEKILKDISQSFKKNKLGTAQQAEYLKVIFGEEAMKGAVKLVAAAGNGKLAEKKGKLVQAEGTAEAIAAVK MDNLDGDLKNLTSAWEDLRIEVFETQDSALRKLTVTATGWLIKAADWAKKNPELVATLTKVTGAALALIGGLGALGLIAW PVMTGFNLLLAGAGLLSTGFSLMAGTIAAALTALTWPIVAVVAAIVAGALLIRKYWEPISAFIAGVAEGFMAAMGPVSAA FEPLKPVFAWFSDKVKQLANWFADLIRPVKATQETLDRATNAGKVFGEGLAAALCLPMNALNTLRAGIDWVLEKLGIIDT KSNDLADKIPDEPRYGYGYGTSGWSGGYQPVTANTGTTIVDSSVTTNDININIPPGMSRQDAEKMMTDALAKNERDKRAR QRGQMEND >Mature_807_residues SRSLQLQVLLRAVDQATRPFKAVQAASKALSGDIRTTQGSIKALEAQSAKIDGFRKASAQLAVTGQALKKAKENAAALAI QLRNTANPTAQQTRLMEGAKRAASDLQTKYNGLRQSVQRQRDTLNASGISTRNLSSEQRRLRSSAAEATAALSRQRQELQ RLSQRQERLNRISARYQRGRAAAGAVRNASAVSVGVATAGLYGAARLIAPGVEFDSQMSGTQAILGLDKKDAKLAAIRQQ ARDIGGSTAFSPTDVARTQDTLARSGYDADAILAATAPTVNLSLASGLDIAEAADIVTNMQSAFNLPLDQIQRVSDVMAK GFTSSNTNLSELGEAMKYVAPIAEAAGASIEDTTALLGVLADNGIKGSMAGTSTSAVFSRLQAPRGVAPVALRELGITTR DSKGNMLPVEKILKDISQSFKKNKLGTAQQAEYLKVIFGEEAMKGAVKLVAAAGNGKLAEKKGKLVQAEGTAEAIAAVKM DNLDGDLKNLTSAWEDLRIEVFETQDSALRKLTVTATGWLIKAADWAKKNPELVATLTKVTGAALALIGGLGALGLIAWP VMTGFNLLLAGAGLLSTGFSLMAGTIAAALTALTWPIVAVVAAIVAGALLIRKYWEPISAFIAGVAEGFMAAMGPVSAAF EPLKPVFAWFSDKVKQLANWFADLIRPVKATQETLDRATNAGKVFGEGLAAALCLPMNALNTLRAGIDWVLEKLGIIDTK SNDLADKIPDEPRYGYGYGTSGWSGGYQPVTANTGTTIVDSSVTTNDININIPPGMSRQDAEKMMTDALAKNERDKRARQ RGQMEND
Specific function: Unknown
COG id: COG5283
COG function: function code S; Phage-related tail protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85335; Mature: 85204
Theoretical pI: Translated: 10.24; Mature: 10.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSLQLQVLLRAVDQATRPFKAVQAASKALSGDIRTTQGSIKALEAQSAKIDGFRKASA CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHCCC QLAVTGQALKKAKENAAALAIQLRNTANPTAQQTRLMEGAKRAASDLQTKYNGLRQSVQR HHEEEHHHHHHHHHCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRDTLNASGISTRNLSSEQRRLRSSAAEATAALSRQRQELQRLSQRQERLNRISARYQRG HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RAAAGAVRNASAVSVGVATAGLYGAARLIAPGVEFDSQMSGTQAILGLDKKDAKLAAIRQ CHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHH QARDIGGSTAFSPTDVARTQDTLARSGYDADAILAATAPTVNLSLASGLDIAEAADIVTN HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEHHCCCCHHHHHHHHHH MQSAFNLPLDQIQRVSDVMAKGFTSSNTNLSELGEAMKYVAPIAEAAGASIEDTTALLGV HHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH LADNGIKGSMAGTSTSAVFSRLQAPRGVAPVALRELGITTRDSKGNMLPVEKILKDISQS HHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH FKKNKLGTAQQAEYLKVIFGEEAMKGAVKLVAAAGNGKLAEKKGKLVQAEGTAEAIAAVK HHHCCCCCHHHHHHHHHHHCHHHHHHHHHEEEECCCCCCHHHCCCEEEECCHHHHHHHHH MDNLDGDLKNLTSAWEDLRIEVFETQDSALRKLTVTATGWLIKAADWAKKNPELVATLTK HCCCCCHHHHHHHHHHHCEEEEEECCHHHHHEEEEEECCCEEECCHHCCCCCHHHHHHHH VTGAALALIGGLGALGLIAWPVMTGFNLLLAGAGLLSTGFSLMAGTIAAALTALTWPIVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VVAAIVAGALLIRKYWEPISAFIAGVAEGFMAAMGPVSAAFEPLKPVFAWFSDKVKQLAN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH WFADLIRPVKATQETLDRATNAGKVFGEGLAAALCLPMNALNTLRAGIDWVLEKLGIIDT HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KSNDLADKIPDEPRYGYGYGTSGWSGGYQPVTANTGTTIVDSSVTTNDININIPPGMSRQ CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCEEECCEEEECCCCCCHH DAEKMMTDALAKNERDKRARQRGQMEND HHHHHHHHHHHCCHHHHHHHHCCCCCCC >Mature Secondary Structure SRSLQLQVLLRAVDQATRPFKAVQAASKALSGDIRTTQGSIKALEAQSAKIDGFRKASA CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHCCC QLAVTGQALKKAKENAAALAIQLRNTANPTAQQTRLMEGAKRAASDLQTKYNGLRQSVQR HHEEEHHHHHHHHHCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRDTLNASGISTRNLSSEQRRLRSSAAEATAALSRQRQELQRLSQRQERLNRISARYQRG HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC RAAAGAVRNASAVSVGVATAGLYGAARLIAPGVEFDSQMSGTQAILGLDKKDAKLAAIRQ CHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHH QARDIGGSTAFSPTDVARTQDTLARSGYDADAILAATAPTVNLSLASGLDIAEAADIVTN HHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEHHCCCCHHHHHHHHHH MQSAFNLPLDQIQRVSDVMAKGFTSSNTNLSELGEAMKYVAPIAEAAGASIEDTTALLGV HHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH LADNGIKGSMAGTSTSAVFSRLQAPRGVAPVALRELGITTRDSKGNMLPVEKILKDISQS HHCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH FKKNKLGTAQQAEYLKVIFGEEAMKGAVKLVAAAGNGKLAEKKGKLVQAEGTAEAIAAVK HHHCCCCCHHHHHHHHHHHCHHHHHHHHHEEEECCCCCCHHHCCCEEEECCHHHHHHHHH MDNLDGDLKNLTSAWEDLRIEVFETQDSALRKLTVTATGWLIKAADWAKKNPELVATLTK HCCCCCHHHHHHHHHHHCEEEEEECCHHHHHEEEEEECCCEEECCHHCCCCCHHHHHHHH VTGAALALIGGLGALGLIAWPVMTGFNLLLAGAGLLSTGFSLMAGTIAAALTALTWPIVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VVAAIVAGALLIRKYWEPISAFIAGVAEGFMAAMGPVSAAFEPLKPVFAWFSDKVKQLAN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH WFADLIRPVKATQETLDRATNAGKVFGEGLAAALCLPMNALNTLRAGIDWVLEKLGIIDT HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KSNDLADKIPDEPRYGYGYGTSGWSGGYQPVTANTGTTIVDSSVTTNDININIPPGMSRQ CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCEEECCEEEECCCCCCHH DAEKMMTDALAKNERDKRARQRGQMEND HHHHHHHHHHHCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA