Click here to switch to the map view.

The map label for this gene is ycdO [H]

Identifier: 51596061

GI number: 51596061

Start: 2083534

End: 2084658

Strand: Direct

Name: ycdO [H]

Synonym: YPTB1726

Alternate gene names: 51596061

Gene position: 2083534-2084658 (Clockwise)

Preceding gene: 51596060

Following gene: 51596062

Centisome position: 43.91

GC content: 47.29

Gene sequence:

>1125_bases
ATGTCTATTTGGTTCTTCCGTCGCACAGCGTTACACGCCGCGTTGTTGTCTCTGCCTGCTTTCGCTATCAGCGCACAGGC
TGCTGATATTCCACAGGTTAAAATCACTGTCAATGATAAACAATGTGAGCCAATGGCACTGACGGTTCCTGCCGGCAAAA
CACAGTTTATTGTGCACAATGTTAGCCAGAAAGGACTGGAGTGGGAGATTTTAAAAGGGGTGATGGTGGTGGAGGAACGT
GAGAATATCGCGCCAGGTTTTACCCAAAAAATGACGGCGAATCTGGAACCTGGTGAATATGATATGACCTGCGGCTTGTT
AAGTAATCCGAAAGGTAAATTAACTGTGGCAGCAGGTGAACAAGCCCCGGTGAAACCCGATGCGATGGCATTAGTCGGCC
CGATTGCTGAATATAAGGTTTATGTCACACAAGAAGTGGCTCAGTTAGTCAGCCAAACCAAAGCGTTCACCGATGCAGTG
AAGGCTGGGGATCTGGCACTGGCACGTAAATTGTATGCGCCGACTCGCCAGCATTATGAGCGTATCGAACCGATTGCCGA
ACTGTTCTCTGATTTGGACGGCAGTATTGATGCCCGTGAAGATGATTTTGAACAGAAATCGGCAGACCCTAAATTTACCG
GTTTCCACCGTTTAGAAAAAATCCTGTTTGGAGATAACACAACCAAAGGTGCAGATAAGTTTGCAGACCTGTTGTATCAG
GACACATTGGAACTGCAAAAACGCATTGCTGGTCTGACATTTGCGCCTAATAAAGTGGTGGGCGGGGCGGCAGGGTTAAT
TGAGGAAGTCGCAGCCAGTAAAATTAGCGGGGAAGAAGACCGCTATAGCCGTACCGATTTGTGGGATTTTCAAGCCAACG
TCGATGGCGCACAGAAAATTGTCAATCTCCTGAGGCCATTACTGGAAAAAGCAGATAAACCATTACTGCAAAAAATTGAT
GCGAATTTTAACACGGTTGATAGCGTGCTGGCGAAATATCGTACCAAAGAGGGTTATGAATCCTACGAGAAGCTAACCGA
TGCGGATCGTAATGCGATGAAAGGACCAATCACTGCTCTGGCGGAAGACCTTGCTCAACTGCGTGGTGTATTAGGTCTGG
ATTGA

Upstream 100 bases:

>100_bases
TTCTGTTTTTCCTTCCACCACGTTCCACTGCGGGTTCGGCTATCGCTGCGGCGCGGAAAATTAATCCATAACTAAAATGA
TCAGTTCAGGGAGTTATTAC

Downstream 100 bases:

>100_bases
GGTTGTTAACATGAGAGACAAAACCGGCCCGAAATTCGGGCCGTATCAACCGGATGATGAGGCGGTGTCGCCGTCACGTC
GGCGTTTAATTTTAGGGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MSIWFFRRTALHAALLSLPAFAISAQAADIPQVKITVNDKQCEPMALTVPAGKTQFIVHNVSQKGLEWEILKGVMVVEER
ENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTDAV
KAGDLALARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLLYQ
DTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLEKADKPLLQKID
ANFNTVDSVLAKYRTKEGYESYEKLTDADRNAMKGPITALAEDLAQLRGVLGLD

Sequences:

>Translated_374_residues
MSIWFFRRTALHAALLSLPAFAISAQAADIPQVKITVNDKQCEPMALTVPAGKTQFIVHNVSQKGLEWEILKGVMVVEER
ENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTDAV
KAGDLALARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLLYQ
DTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLEKADKPLLQKID
ANFNTVDSVLAKYRTKEGYESYEKLTDADRNAMKGPITALAEDLAQLRGVLGLD
>Mature_373_residues
SIWFFRRTALHAALLSLPAFAISAQAADIPQVKITVNDKQCEPMALTVPAGKTQFIVHNVSQKGLEWEILKGVMVVEERE
NIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVAAGEQAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTDAVK
AGDLALARKLYAPTRQHYERIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLLYQD
TLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKIVNLLRPLLEKADKPLLQKIDA
NFNTVDSVLAKYRTKEGYESYEKLTDADRNAMKGPITALAEDLAQLRGVLGLD

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=371, Percent_Identity=74.6630727762803, Blast_Score=571, Evalue=1e-164,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 41094; Mature: 40963

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIWFFRRTALHAALLSLPAFAISAQAADIPQVKITVNDKQCEPMALTVPAGKTQFIVHN
CCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEEC
VSQKGLEWEILKGVMVVEERENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVAAGE
CHHCCCCHHHHHCCCEEECCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCCEEEEECC
QAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTDAVKAGDLALARKLYAPTRQHYE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLLYQ
HHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
DTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKI
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHH
VNLLRPLLEKADKPLLQKIDANFNTVDSVLAKYRTKEGYESYEKLTDADRNAMKGPITAL
HHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AEDLAQLRGVLGLD
HHHHHHHHHHCCCC
>Mature Secondary Structure 
SIWFFRRTALHAALLSLPAFAISAQAADIPQVKITVNDKQCEPMALTVPAGKTQFIVHN
CEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEEEC
VSQKGLEWEILKGVMVVEERENIAPGFTQKMTANLEPGEYDMTCGLLSNPKGKLTVAAGE
CHHCCCCHHHHHCCCEEECCCCCCCCCHHHHCCCCCCCCCEEEECCCCCCCCCEEEEECC
QAPVKPDAMALVGPIAEYKVYVTQEVAQLVSQTKAFTDAVKAGDLALARKLYAPTRQHYE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RIEPIAELFSDLDGSIDAREDDFEQKSADPKFTGFHRLEKILFGDNTTKGADKFADLLYQ
HHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
DTLELQKRIAGLTFAPNKVVGGAAGLIEEVAASKISGEEDRYSRTDLWDFQANVDGAQKI
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHH
VNLLRPLLEKADKPLLQKIDANFNTVDSVLAKYRTKEGYESYEKLTDADRNAMKGPITAL
HHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AEDLAQLRGVLGLD
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA