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The map label for this gene is YedO

Identifier: 51596052

GI number: 51596052

Start: 2071460

End: 2072452

Strand: Direct

Name: YedO

Synonym: YPTB1717

Alternate gene names: 51596052

Gene position: 2071460-2072452 (Clockwise)

Preceding gene: 51596051

Following gene: 51596053

Centisome position: 43.66

GC content: 51.46

Gene sequence:

>993_bases
GTGACGCTTCAACACAAACTGACGCAATTCCCGCGTCTCGATCTGGTCGGTAATGCGACGCCATTAGAAAAGCTGTCTCG
TCTATCTGATTATCTGGGACGTGAAATTTACATTAAACGTGATGATGTCACGCCTGTGGCGCTTGGCGGGAATAAACTGC
GCAAGCTAGAATTCTTAGCCGCAGATGCCTTGAGACAGGGAGCCGATACGCTGGTTACGGCTGGTGCTATTCAATCTAAT
CATGTCCGCCAAACCGCCGCCGTGGCCGCGAAACTGGGGCTGCATTGCGTTGCGCTGTTGGAAAACCCCATTGGTACTGA
GCAGGCAAACTATCTGACCAATGGGAACCGGCTGTTACTGGACCTATTCAATGTTGATGTTGTGATGTGTGAGGCATTGA
ACGATCCAAATCAGCAATTAGCAGAATTGGCTACCCGCGTGGAAGCGCAGGGTTTCCGCCCATATGTGGTACCGATTGGC
GGTTCTAATGCCTTGGGCGCGCTGGGTTATGTGCAGTGCTCACTGGAAATTGCTGCTCAAGCCGCGGGCAATGTTGCGTT
TAGTTCGGTCGTCGTGGCCTCTGGCAGTGCGGGAACACATGCAGGATTGGCGGTTGGTCTACAGCAGTTGTTACCCGATG
CGGAATTAATCGGTGTGACGGTATCACGTAGTGCCGATGAACAGCGGCCTAAAGTGGCACAGATTCAACAAGCGTTGGCG
ACATCATTAGGGATGACGGACCCATTGGCAAAAATCACCTTGTGGGATAGTTATTTTGCCCCGCAATATGGGATGCCAAA
CGAAGAGGGGATAGCGGCTATTAAGCTCTTGGCAAGACTGGAAGGAATATTGTTGGACCCTGTGTATACCGGTAAGGCGA
TGGCGGGCTTACTTGATGGTATTGAACAGCAAAAATTCTGCGACAAAGGGCCAATTTTATTTATCCACACTGGCGGGGCA
CCTGCGCTGTTTGCTTATCATCCGCAGGTGTAG

Upstream 100 bases:

>100_bases
GATATTGGTCACTGACATCACTCATAAAATCAGTGCTTATTAATGTCACATCTGATAAATCTATATAAAAGCCATGATTC
ATCAATTCCTTGGGGGGCAC

Downstream 100 bases:

>100_bases
CCTAAGCTTTCATTATTACTTATTCCATTTTTAACTATATTTATCATTTTATATTTCTTCACTTCATTAATAGCACTGGT
AAAGTGTTGAATATCAAAAA

Product: D-cysteine desulfhydrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MTLQHKLTQFPRLDLVGNATPLEKLSRLSDYLGREIYIKRDDVTPVALGGNKLRKLEFLAADALRQGADTLVTAGAIQSN
HVRQTAAVAAKLGLHCVALLENPIGTEQANYLTNGNRLLLDLFNVDVVMCEALNDPNQQLAELATRVEAQGFRPYVVPIG
GSNALGALGYVQCSLEIAAQAAGNVAFSSVVVASGSAGTHAGLAVGLQQLLPDAELIGVTVSRSADEQRPKVAQIQQALA
TSLGMTDPLAKITLWDSYFAPQYGMPNEEGIAAIKLLARLEGILLDPVYTGKAMAGLLDGIEQQKFCDKGPILFIHTGGA
PALFAYHPQV

Sequences:

>Translated_330_residues
MTLQHKLTQFPRLDLVGNATPLEKLSRLSDYLGREIYIKRDDVTPVALGGNKLRKLEFLAADALRQGADTLVTAGAIQSN
HVRQTAAVAAKLGLHCVALLENPIGTEQANYLTNGNRLLLDLFNVDVVMCEALNDPNQQLAELATRVEAQGFRPYVVPIG
GSNALGALGYVQCSLEIAAQAAGNVAFSSVVVASGSAGTHAGLAVGLQQLLPDAELIGVTVSRSADEQRPKVAQIQQALA
TSLGMTDPLAKITLWDSYFAPQYGMPNEEGIAAIKLLARLEGILLDPVYTGKAMAGLLDGIEQQKFCDKGPILFIHTGGA
PALFAYHPQV
>Mature_329_residues
TLQHKLTQFPRLDLVGNATPLEKLSRLSDYLGREIYIKRDDVTPVALGGNKLRKLEFLAADALRQGADTLVTAGAIQSNH
VRQTAAVAAKLGLHCVALLENPIGTEQANYLTNGNRLLLDLFNVDVVMCEALNDPNQQLAELATRVEAQGFRPYVVPIGG
SNALGALGYVQCSLEIAAQAAGNVAFSSVVVASGSAGTHAGLAVGLQQLLPDAELIGVTVSRSADEQRPKVAQIQQALAT
SLGMTDPLAKITLWDSYFAPQYGMPNEEGIAAIKLLARLEGILLDPVYTGKAMAGLLDGIEQQKFCDKGPILFIHTGGAP
ALFAYHPQV

Specific function: Catalyzes the alpha,beta-elimination reaction of D- cysteine and of several D-cysteine derivatives. It could be a defense mechanism against D-cysteine [H]

COG id: COG2515

COG function: function code E; 1-aminocyclopropane-1-carboxylate deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ACC deaminase/D-cysteine desulfhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082000, Length=326, Percent_Identity=77.6073619631902, Blast_Score=523, Evalue=1e-150,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005966
- InterPro:   IPR001926 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.4.1.15 [H]

Molecular weight: Translated: 35049; Mature: 34918

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLQHKLTQFPRLDLVGNATPLEKLSRLSDYLGREIYIKRDDVTPVALGGNKLRKLEFLA
CCCHHHHHHCCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEECCCHHHHHHHHH
ADALRQGADTLVTAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTEQANYLTNGNRLLL
HHHHHCCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEE
DLFNVDVVMCEALNDPNQQLAELATRVEAQGFRPYVVPIGGSNALGALGYVQCSLEIAAQ
EECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHEEEHHHHHHH
AAGNVAFSSVVVASGSAGTHAGLAVGLQQLLPDAELIGVTVSRSADEQRPKVAQIQQALA
HCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHH
TSLGMTDPLAKITLWDSYFAPQYGMPNEEGIAAIKLLARLEGILLDPVYTGKAMAGLLDG
HHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHH
IEQQKFCDKGPILFIHTGGAPALFAYHPQV
HHHHHHCCCCCEEEEECCCCCEEEEECCCC
>Mature Secondary Structure 
TLQHKLTQFPRLDLVGNATPLEKLSRLSDYLGREIYIKRDDVTPVALGGNKLRKLEFLA
CCHHHHHHCCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEECCCHHHHHHHHH
ADALRQGADTLVTAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTEQANYLTNGNRLLL
HHHHHCCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEE
DLFNVDVVMCEALNDPNQQLAELATRVEAQGFRPYVVPIGGSNALGALGYVQCSLEIAAQ
EECCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHEEEHHHHHHH
AAGNVAFSSVVVASGSAGTHAGLAVGLQQLLPDAELIGVTVSRSADEQRPKVAQIQQALA
HCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHH
TSLGMTDPLAKITLWDSYFAPQYGMPNEEGIAAIKLLARLEGILLDPVYTGKAMAGLLDG
HHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHH
IEQQKFCDKGPILFIHTGGAPALFAYHPQV
HHHHHHCCCCCEEEEECCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]