Click here to switch to the map view.

The map label for this gene is fliN

Identifier: 51596031

GI number: 51596031

Start: 2049658

End: 2050074

Strand: Reverse

Name: fliN

Synonym: YPTB1695

Alternate gene names: 51596031

Gene position: 2050074-2049658 (Counterclockwise)

Preceding gene: 51596032

Following gene: 51596030

Centisome position: 43.21

GC content: 49.64

Gene sequence:

>417_bases
ATGAGTGACCCTAAGTTTCCGTCTGCTGATGGAAAGGAATCCGTGGACGATCTGTGGGCTGATGCGTTTAATGAGCAGCA
AGCAACAGAAAAACCCACGGCCACAACCGAAGGCGTCTTTAAATCGCTGGAAGCACCTGAGGGGCTGGGTAATTTGCAGG
ATATCGATTTAATTCTGGATATTCCGGTAAAACTCTCCGTTGAATTAGGTCGCACCAAAATGACCATCAAAGAGTTACTG
CGCCTGTCACAAGGCTCGGTGGTCTCCCTTGATGGTTTGGCAGGCGAACCCCTGGATATTTTGATTAACGGTTATCTGAT
TGCTCAGGGCGAAGTGGTGGTAGTGGCCGATAAATACGGGGTCCGCATCACGGACATCATTACGCCATCTGAACGTATGC
GTCGTTTGAGCCGCTAA

Upstream 100 bases:

>100_bases
TACTAACCAGTCAATACGGGACATTAAACGGGCAATATGCCCTGCGTGTTGAACATTTGATTAACCCTATTTTGAATGCT
CTGAGTGAGGAACAGCCCAA

Downstream 100 bases:

>100_bases
TGACTGCAGCCGCACCGGCCTCGACAATACTGGCCTCGACAACATTGGCCTCAACAACGTTGGCTTCAACAACATTGGCC
TCAACAGCATTGGCCTCAAC

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MSDPKFPSADGKESVDDLWADAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELL
RLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR

Sequences:

>Translated_138_residues
MSDPKFPSADGKESVDDLWADAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELL
RLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR
>Mature_137_residues
SDPKFPSADGKESVDDLWADAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILDIPVKLSVELGRTKMTIKELLR
LSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=138, Percent_Identity=73.1884057971015, Blast_Score=199, Evalue=8e-53,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 15041; Mature: 14910

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPKFPSADGKESVDDLWADAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILD
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEE
IPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYG
CCEEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCC
VRITDIITPSERMRRLSR
EEEEEEECCHHHHHHHCC
>Mature Secondary Structure 
SDPKFPSADGKESVDDLWADAFNEQQATEKPTATTEGVFKSLEAPEGLGNLQDIDLILD
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEE
IPVKLSVELGRTKMTIKELLRLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVADKYG
CCEEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCC
VRITDIITPSERMRRLSR
EEEEEEECCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2656645; 11677609; 9324257 [H]