Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 51596021

GI number: 51596021

Start: 2040189

End: 2041229

Strand: Direct

Name: rbsC [H]

Synonym: YPTB1685

Alternate gene names: 51596021

Gene position: 2040189-2041229 (Clockwise)

Preceding gene: 51596020

Following gene: 51596022

Centisome position: 43.0

GC content: 50.72

Gene sequence:

>1041_bases
ATGGGCTGCAAACAATTAACTCGCCGTATGTTGAACGATAAGCAACTTAACTTCTTGGTCATGGTCAATATGTTGGTTAT
TACGGTGGCCGCTACCCTTACCCAAGGGGCCTTTGTCGATCTCTACAATCTACAAACGATGGCGGGGCAGGTCCCTGAAT
TGGGCTTGCTGGCGATGGGGGTCATGCTGGCCATGATCGTGGGTAATGGGGGGATTGATCTCTCGGGTATCGCTCTCGCT
AATCTGGCGGCGGTAGTCGCCGGCACGCTCACACCGGGGTGGGTCAATGCTGTTGATAGCCCTTTGCTGTTTACCGTGGT
TTTTGTCTTATGCGCCTTGTTGGTCGGTCTGACCGGGGGGCTAATCAATGGGGTGCTCATTGCTTACGCTAAACTCACGC
CGATCCTCTGCACCTTAGGCACTCAACTTATTTTCACCGGCTTTGCTGTCGTGATTTCTCATGGTAGCGGCGTTAAGATT
GGTTTTATTGAACCGCTGTCCTTTATTGGTGATGGCCTTATTGCCAATATTCCGTTCTGTTTTGCGCTGTTTATCCTCCT
CGCCACGTTGTTAGGTCTTTGGTTACGTTTTAGTGCGACCGGGATACGGCTATATCTCTTGGGAACCAATCTTAAAGCTG
CACAGTATATTGGCATTGCGCAACAACGGTTGCTGGTCGTCATCTATACCTTATCAGGCACTTTAGCCGCTATCGCCGGC
ATTATTATTGCCGCCCGTTCTACCAGCGCTACCGCCGATTACGGTAGCTCTTATGTGTTGATTGCTATTTTGATCGCTGT
GATGGCTGGGGTCCGCCCAGAGGGGGGATATGGGCGAATGGGCTGCCTATTGCTATCGGCTACCGCCCTCCAGTTTCTTT
CCAGTACCTTTACTTTTCTGGACGTCTCCAGTTTTTTCCGCGACTGCGCTTGGGGCGCGTTGCTGCTGTTCTTCATTATT
TTTTCCCGCATTAATCCCTTGGATTTTGTTAAATCGTTATGGCGAAAAAATACCCCGTCAGTGCAATCCCCCGTGCGCTG
A

Upstream 100 bases:

>100_bases
GGAGCACTGATCAGGAGCCTCAAACCGTTATCGTGATTCAAACCGTTACCGTAATTCAAACAGTATGGGGGTTCAAACTG
TTATGAAAGTTCAAACACGA

Downstream 100 bases:

>100_bases
TGAGCGGTGTTCCTGGGGGAAATCAACTGAGGAAACACCATTATGATGATTAAAAAGTTGTGTCTCATTGCCGCCCTCGT
ATTCAGCCTCGGGATCATGG

Product: ABC sugar transporter, permease subunit

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MGCKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTMAGQVPELGLLAMGVMLAMIVGNGGIDLSGIALA
NLAAVVAGTLTPGWVNAVDSPLLFTVVFVLCALLVGLTGGLINGVLIAYAKLTPILCTLGTQLIFTGFAVVISHGSGVKI
GFIEPLSFIGDGLIANIPFCFALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVVIYTLSGTLAAIAG
IIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSATALQFLSSTFTFLDVSSFFRDCAWGALLLFFII
FSRINPLDFVKSLWRKNTPSVQSPVR

Sequences:

>Translated_346_residues
MGCKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTMAGQVPELGLLAMGVMLAMIVGNGGIDLSGIALA
NLAAVVAGTLTPGWVNAVDSPLLFTVVFVLCALLVGLTGGLINGVLIAYAKLTPILCTLGTQLIFTGFAVVISHGSGVKI
GFIEPLSFIGDGLIANIPFCFALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVVIYTLSGTLAAIAG
IIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSATALQFLSSTFTFLDVSSFFRDCAWGALLLFFII
FSRINPLDFVKSLWRKNTPSVQSPVR
>Mature_345_residues
GCKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTMAGQVPELGLLAMGVMLAMIVGNGGIDLSGIALAN
LAAVVAGTLTPGWVNAVDSPLLFTVVFVLCALLVGLTGGLINGVLIAYAKLTPILCTLGTQLIFTGFAVVISHGSGVKIG
FIEPLSFIGDGLIANIPFCFALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVVIYTLSGTLAAIAGI
IIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSATALQFLSSTFTFLDVSSFFRDCAWGALLLFFIIF
SRINPLDFVKSLWRKNTPSVQSPVR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=289, Percent_Identity=29.0657439446367, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI145693152, Length=204, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790524, Length=318, Percent_Identity=26.4150943396226, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788471, Length=220, Percent_Identity=33.6363636363636, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787794, Length=285, Percent_Identity=25.6140350877193, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788896, Length=197, Percent_Identity=28.9340101522843, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=28.3737024221453, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36686; Mature: 36555

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTMAGQVPELGLLAMG
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCHHHHHHH
VMLAMIVGNGGIDLSGIALANLAAVVAGTLTPGWVNAVDSPLLFTVVFVLCALLVGLTGG
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LINGVLIAYAKLTPILCTLGTQLIFTGFAVVISHGSGVKIGFIEPLSFIGDGLIANIPFC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHCCCHHHHHHHH
FALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVVIYTLSGTLAAIAG
HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHEEEEEHHHHHHHHHHH
IIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSATALQFLSSTFTFL
HHHHCCCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DVSSFFRDCAWGALLLFFIIFSRINPLDFVKSLWRKNTPSVQSPVR
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
GCKQLTRRMLNDKQLNFLVMVNMLVITVAATLTQGAFVDLYNLQTMAGQVPELGLLAMG
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCHHHHHHH
VMLAMIVGNGGIDLSGIALANLAAVVAGTLTPGWVNAVDSPLLFTVVFVLCALLVGLTGG
HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH
LINGVLIAYAKLTPILCTLGTQLIFTGFAVVISHGSGVKIGFIEPLSFIGDGLIANIPFC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHCCCHHHHHHHH
FALFILLATLLGLWLRFSATGIRLYLLGTNLKAAQYIGIAQQRLLVVIYTLSGTLAAIAG
HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHEEEEEHHHHHHHHHHH
IIIAARSTSATADYGSSYVLIAILIAVMAGVRPEGGYGRMGCLLLSATALQFLSSTFTFL
HHHHCCCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
DVSSFFRDCAWGALLLFFIIFSRINPLDFVKSLWRKNTPSVQSPVR
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]