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The map label for this gene is rbsC [H]

Identifier: 51595902

GI number: 51595902

Start: 1884738

End: 1885733

Strand: Reverse

Name: rbsC [H]

Synonym: YPTB1565

Alternate gene names: 51595902

Gene position: 1885733-1884738 (Counterclockwise)

Preceding gene: 51595903

Following gene: 51595901

Centisome position: 39.74

GC content: 51.71

Gene sequence:

>996_bases
GTGAGCAAAGAATTACCCCTACCAGACGTGCAGTCTTGGCGTCACCAGTTGTTTGATTTTCTCTACAAATGGGGAATGTT
GCTCACCGTTGTTGCGTTAATCGCGCTATTTGGTTTGGCATCGGATAACTTCCTCGATCCAAACAATATCATCAACATTT
TACGTTCTATCGCCATTGTGACCGTAATTGCCATCGGGGTGTCTATCTCGCTGTCGATTGGCGGTTTTGACCTGTCAGTA
GGCTCCACGGCCTCGTTGGCGAATGCCGTCGTGGTATCACTGTTTGTCTGGTATGGCTTCGGTACCACGGGCGCAATAAT
CCTGACGCTGCTGATTTGCACACTGGTCGGTCTGTTTAATGCTTTCCTGATTGTGGTGCTGAAAATCCCCGATATGCTAG
CCACCCTGGCCAGCCTGTTTGTGATTCAGGGGGTCGCCATGACTTACAGCCGCGGCGGTTCGATCACTCAAAGTATGTTG
TTGCCCAGTGGCGATATGGCGGAAGGGGTTATTCCAGAAATTTTTTCCGCACTCGGCCAGGTACCGGTTATCGTGCTGAT
TATGTTAGCGGTCACCGTGGTGGTGCAGTTGTATTTATCGCTGACCAAGCACGGGCGGCGGATGTACGCCATTGGCGGTA
ACCCACAAGCCGCGCGGCTGGCGGGGATCCGCACGGTTCGCTATCGGGTACTGGCTTATGTGCTCTCCGCTCAATTGGCG
GCACTCGGTGGGATCTTGCTGGCTTCACGCATTGGTTCATCGCAGGTGAATGCTGGCAGTGGTTATTTGATGGACGCCGT
CGCCGCCGCCTATATCGGCTTTTCACTGGCTGGCTCGGGTAAACCTAATGCGTTCGGCACCTTAATTGGCGCAATAATTT
TGGGTGTCTTGCAAAATGGGTTGGTGATGTTGTCAGTGCCTTATTATGCGATGGATATTATTAAAGGCTTGGTATTAGCT
ATGGCCCTGGCACTGACTTATATTCAGAAACGGTGA

Upstream 100 bases:

>100_bases
GTATCTGCGTATTGTGGGATGGCCGAATTGTTGCCGAACTGAATGCTGCAGAGGTCGATGAAGAGACATTATTACTATTT
TCAACCGGAGGAACCCCTCA

Downstream 100 bases:

>100_bases
TCGGAAATCAAAATAAGGTGCAGCGCACAAATCCCGATGAGCTGGCTCCAGTCAGTGATGCGGAAGTTGTATGCTGCAAC
AGGCCATGCAACGCTATGGA

Product: ABC sugar transporter, permease subunit

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSKELPLPDVQSWRHQLFDFLYKWGMLLTVVALIALFGLASDNFLDPNNIINILRSIAIVTVIAIGVSISLSIGGFDLSV
GSTASLANAVVVSLFVWYGFGTTGAIILTLLICTLVGLFNAFLIVVLKIPDMLATLASLFVIQGVAMTYSRGGSITQSML
LPSGDMAEGVIPEIFSALGQVPVIVLIMLAVTVVVQLYLSLTKHGRRMYAIGGNPQAARLAGIRTVRYRVLAYVLSAQLA
ALGGILLASRIGSSQVNAGSGYLMDAVAAAYIGFSLAGSGKPNAFGTLIGAIILGVLQNGLVMLSVPYYAMDIIKGLVLA
MALALTYIQKR

Sequences:

>Translated_331_residues
MSKELPLPDVQSWRHQLFDFLYKWGMLLTVVALIALFGLASDNFLDPNNIINILRSIAIVTVIAIGVSISLSIGGFDLSV
GSTASLANAVVVSLFVWYGFGTTGAIILTLLICTLVGLFNAFLIVVLKIPDMLATLASLFVIQGVAMTYSRGGSITQSML
LPSGDMAEGVIPEIFSALGQVPVIVLIMLAVTVVVQLYLSLTKHGRRMYAIGGNPQAARLAGIRTVRYRVLAYVLSAQLA
ALGGILLASRIGSSQVNAGSGYLMDAVAAAYIGFSLAGSGKPNAFGTLIGAIILGVLQNGLVMLSVPYYAMDIIKGLVLA
MALALTYIQKR
>Mature_330_residues
SKELPLPDVQSWRHQLFDFLYKWGMLLTVVALIALFGLASDNFLDPNNIINILRSIAIVTVIAIGVSISLSIGGFDLSVG
STASLANAVVVSLFVWYGFGTTGAIILTLLICTLVGLFNAFLIVVLKIPDMLATLASLFVIQGVAMTYSRGGSITQSMLL
PSGDMAEGVIPEIFSALGQVPVIVLIMLAVTVVVQLYLSLTKHGRRMYAIGGNPQAARLAGIRTVRYRVLAYVLSAQLAA
LGGILLASRIGSSQVNAGSGYLMDAVAAAYIGFSLAGSGKPNAFGTLIGAIILGVLQNGLVMLSVPYYAMDIIKGLVLAM
ALALTYIQKR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=319, Percent_Identity=32.2884012539185, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788896, Length=328, Percent_Identity=29.2682926829268, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1789992, Length=360, Percent_Identity=27.2222222222222, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI145693152, Length=321, Percent_Identity=31.1526479750779, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787793, Length=284, Percent_Identity=31.6901408450704, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87082395, Length=258, Percent_Identity=32.9457364341085, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790524, Length=303, Percent_Identity=27.7227722772277, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788471, Length=334, Percent_Identity=28.1437125748503, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787794, Length=305, Percent_Identity=28.8524590163934, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI145693214, Length=259, Percent_Identity=31.6602316602317, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34917; Mature: 34786

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKELPLPDVQSWRHQLFDFLYKWGMLLTVVALIALFGLASDNFLDPNNIINILRSIAIV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
TVIAIGVSISLSIGGFDLSVGSTASLANAVVVSLFVWYGFGTTGAIILTLLICTLVGLFN
HHHHHHHHEEEEECCEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AFLIVVLKIPDMLATLASLFVIQGVAMTYSRGGSITQSMLLPSGDMAEGVIPEIFSALGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHCC
VPVIVLIMLAVTVVVQLYLSLTKHGRRMYAIGGNPQAARLAGIRTVRYRVLAYVLSAQLA
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALGGILLASRIGSSQVNAGSGYLMDAVAAAYIGFSLAGSGKPNAFGTLIGAIILGVLQNG
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
LVMLSVPYYAMDIIKGLVLAMALALTYIQKR
EEEEECHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKELPLPDVQSWRHQLFDFLYKWGMLLTVVALIALFGLASDNFLDPNNIINILRSIAIV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
TVIAIGVSISLSIGGFDLSVGSTASLANAVVVSLFVWYGFGTTGAIILTLLICTLVGLFN
HHHHHHHHEEEEECCEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AFLIVVLKIPDMLATLASLFVIQGVAMTYSRGGSITQSMLLPSGDMAEGVIPEIFSALGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHCC
VPVIVLIMLAVTVVVQLYLSLTKHGRRMYAIGGNPQAARLAGIRTVRYRVLAYVLSAQLA
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALGGILLASRIGSSQVNAGSGYLMDAVAAAYIGFSLAGSGKPNAFGTLIGAIILGVLQNG
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
LVMLSVPYYAMDIIKGLVLAMALALTYIQKR
EEEEECHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]