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The map label for this gene is RecN

Identifier: 51595483

GI number: 51595483

Start: 1361899

End: 1363578

Strand: Reverse

Name: RecN

Synonym: YPTB1139

Alternate gene names: 51595483

Gene position: 1363578-1361899 (Counterclockwise)

Preceding gene: 51595484

Following gene: 229310104

Centisome position: 28.74

GC content: 46.31

Gene sequence:

>1680_bases
ATGTACAGGGGGTTTACCATGTTGGTCCAATTAACCATCAGCAACTTTGCTATTGTGCGTGAGTTAGAAATTGATTTTCA
GCCCGGAATGACGGCAATCACTGGCGAAACCGGGGCGGGCAAATCCATTGCCGTAGATGCACTAGGGTTATGCCTCGGGA
ATCGCTCAGATGGCAGCATGGTGCGCTTAGGGGCAACACGCGCTGACATTTGCGCCCGCTTCTCACTGGCGGATACACCA
TCTGCCCGCCAATGGCTGGAAAACAACCATCTCGATGACAATAATGAATGCCTGTTGCGGCGCGCTATTGGCGCTGATGG
CCGTTCAAGAGGCTTTATTAATGGTACGCCTGTACCCGTATCCCAATTAAGAGAGTTGGGCCAACATCTAATTCAGATCC
ACGGCCAACACGCTCATCAACTGCTGCTCAAACCCGATCATCAAAAACAATTATTGGATGCCTACGCAAATCAATCATCT
CTGTTGGCAGAAATGAAGGCAGCCTATCAAATTTGGCATCAAAGTTGCCGTGATCTGGCACTTCACCAACAACAGTCGCT
GGAACGAACTGCCCGCCGAGAGTTATTACAATATCAACTAAAAGAATTGAATTCATTTTCTCCACAGGCAGGGGAATATG
AACAAATTGATATTGAATACAAACGTTTGGCAAATAGCGGGCAATTACTGTCCCTGAGTCAGCAGACTTTACAATTACTG
TCAGATGATGAACAAAACAATATCCTCAGCCAGCTTTACGCTGCCAAACATCAGTTGACCGAGCTGGCCAGTATGGACGA
ACAATTTAATAATCTACTGAATATGTTAGAAGAAGCCTCAATCCAAATCAGTGAAGCCAGTGATGAGTTACGTCACTATG
CGGAACAATTAGATATGGATCCAAATCGTCTATATGAGCTAGAAAAACGGTTATCTCGGCAATTAAATCTCGCGCGGAAA
CACCATGTAGCACCGGAAGAATTGCCACAATTTCATCAGCAATTGCTGGATGAACAAGAACTGCTCTCACAACAAGAAAA
TGATCACGAACAACTTAGTAATGCAGTAAATACTCACTATCAGCAAGCACTGGCAATAGCAAAACGGCTACACCAAGAGC
GTCAATATTATGCCAATGAACTGGCTGCACTGATTACTGAAAGCATGCATGAGCTATCGATGCCACATGGCAAGTTCGCC
ATTGAAACAATATTTGAGCCAGAACATCTTAGTGCGGAAGGGGCAACCCGAATTGAGTTCTGTGTCACCACCAATCCAGG
CCAACCCCTACAAGCACTGGTCAAAGTTGCATCTGGTGGTGAGCTGTCTCGCATCGCCTTGGCTATTCAGGTAATTACAG
CACGTAAAATGGACACCCCAGCATTAATCTTTGATGAGGTAGATGTAGGTATCAGCGGCCCAACGGCGGCCATAGTTGGC
CGCCTGCTACGTCAACTTGGCGAATCAACTCAAGTCATGTGCGTAACCCACCTTCCGCAAGTTGCCGGCTGTGGTCATCA
ACATTTCTTTGTGAGTAAACAAACCGATGGTACTGAGACTGAAACTCATATGCATCGGTTAGATAAAAAAGCCCGCTTAC
AAGAGTTGGCGCGTCTTCTGGGCGGTAGTGAGGTGACAAAAAACACCTTGGCAAACGCAAAAGAATTGCTTGCTGCATAG

Upstream 100 bases:

>100_bases
CCAAATTGGGTTGGTCAAAAAAATTATTCTAAAAATCACCTCAGCTACTTTACTGTATATAAAACCAGGCTATACTGTAT
TCAAATACAGACATGTGTTT

Downstream 100 bases:

>100_bases
AAAAGATTAACTTTTTTCCTTTTTGGTGGTCATACAGGTGCCCTGTAAAGGTTTCCAACTGCCGCAAGGTCTATTATCAT
CGTCATCCTATGCCCTAAAG

Product: recombination and repair protein

Products: NA

Alternate protein names: Recombination protein N [H]

Number of amino acids: Translated: 559; Mature: 559

Protein sequence:

>559_residues
MYRGFTMLVQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAVDALGLCLGNRSDGSMVRLGATRADICARFSLADTP
SARQWLENNHLDDNNECLLRRAIGADGRSRGFINGTPVPVSQLRELGQHLIQIHGQHAHQLLLKPDHQKQLLDAYANQSS
LLAEMKAAYQIWHQSCRDLALHQQQSLERTARRELLQYQLKELNSFSPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL
SDDEQNNILSQLYAAKHQLTELASMDEQFNNLLNMLEEASIQISEASDELRHYAEQLDMDPNRLYELEKRLSRQLNLARK
HHVAPEELPQFHQQLLDEQELLSQQENDHEQLSNAVNTHYQQALAIAKRLHQERQYYANELAALITESMHELSMPHGKFA
IETIFEPEHLSAEGATRIEFCVTTNPGQPLQALVKVASGGELSRIALAIQVITARKMDTPALIFDEVDVGISGPTAAIVG
RLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKQTDGTETETHMHRLDKKARLQELARLLGGSEVTKNTLANAKELLAA

Sequences:

>Translated_559_residues
MYRGFTMLVQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAVDALGLCLGNRSDGSMVRLGATRADICARFSLADTP
SARQWLENNHLDDNNECLLRRAIGADGRSRGFINGTPVPVSQLRELGQHLIQIHGQHAHQLLLKPDHQKQLLDAYANQSS
LLAEMKAAYQIWHQSCRDLALHQQQSLERTARRELLQYQLKELNSFSPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL
SDDEQNNILSQLYAAKHQLTELASMDEQFNNLLNMLEEASIQISEASDELRHYAEQLDMDPNRLYELEKRLSRQLNLARK
HHVAPEELPQFHQQLLDEQELLSQQENDHEQLSNAVNTHYQQALAIAKRLHQERQYYANELAALITESMHELSMPHGKFA
IETIFEPEHLSAEGATRIEFCVTTNPGQPLQALVKVASGGELSRIALAIQVITARKMDTPALIFDEVDVGISGPTAAIVG
RLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKQTDGTETETHMHRLDKKARLQELARLLGGSEVTKNTLANAKELLAA
>Mature_559_residues
MYRGFTMLVQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAVDALGLCLGNRSDGSMVRLGATRADICARFSLADTP
SARQWLENNHLDDNNECLLRRAIGADGRSRGFINGTPVPVSQLRELGQHLIQIHGQHAHQLLLKPDHQKQLLDAYANQSS
LLAEMKAAYQIWHQSCRDLALHQQQSLERTARRELLQYQLKELNSFSPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL
SDDEQNNILSQLYAAKHQLTELASMDEQFNNLLNMLEEASIQISEASDELRHYAEQLDMDPNRLYELEKRLSRQLNLARK
HHVAPEELPQFHQQLLDEQELLSQQENDHEQLSNAVNTHYQQALAIAKRLHQERQYYANELAALITESMHELSMPHGKFA
IETIFEPEHLSAEGATRIEFCVTTNPGQPLQALVKVASGGELSRIALAIQVITARKMDTPALIFDEVDVGISGPTAAIVG
RLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKQTDGTETETHMHRLDKKARLQELARLLGGSEVTKNTLANAKELLAA

Specific function: May be involved in recombinational repair of damaged DNA [H]

COG id: COG0497

COG function: function code L; ATPase involved in DNA repair

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recN family [H]

Homologues:

Organism=Escherichia coli, GI48994901, Length=553, Percent_Identity=74.3218806509946, Blast_Score=850, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004604
- InterPro:   IPR003395 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 62612; Mature: 62612

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRGFTMLVQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAVDALGLCLGNRSDGSM
CCCHHHHHHHHHHHHHHEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCE
VRLGATRADICARFSLADTPSARQWLENNHLDDNNECLLRRAIGADGRSRGFINGTPVPV
EEECCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCH
SQLRELGQHLIQIHGQHAHQLLLKPDHQKQLLDAYANQSSLLAEMKAAYQIWHQSCRDLA
HHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LHQQQSLERTARRELLQYQLKELNSFSPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHCCCCCEEHHHHHHHHHH
SDDEQNNILSQLYAAKHQLTELASMDEQFNNLLNMLEEASIQISEASDELRHYAEQLDMD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHHCCCC
PNRLYELEKRLSRQLNLARKHHVAPEELPQFHQQLLDEQELLSQQENDHEQLSNAVNTHY
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHH
QQALAIAKRLHQERQYYANELAALITESMHELSMPHGKFAIETIFEPEHLSAEGATRIEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHCCCCCCCCCCCCEEEE
CVTTNPGQPLQALVKVASGGELSRIALAIQVITARKMDTPALIFDEVDVGISGPTAAIVG
EEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH
RLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKQTDGTETETHMHRLDKKARLQELARLL
HHHHHHCCCCEEEEEECCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
GGSEVTKNTLANAKELLAA
CCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYRGFTMLVQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAVDALGLCLGNRSDGSM
CCCHHHHHHHHHHHHHHEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCE
VRLGATRADICARFSLADTPSARQWLENNHLDDNNECLLRRAIGADGRSRGFINGTPVPV
EEECCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCH
SQLRELGQHLIQIHGQHAHQLLLKPDHQKQLLDAYANQSSLLAEMKAAYQIWHQSCRDLA
HHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LHQQQSLERTARRELLQYQLKELNSFSPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHCCCCCEEHHHHHHHHHH
SDDEQNNILSQLYAAKHQLTELASMDEQFNNLLNMLEEASIQISEASDELRHYAEQLDMD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHHCCCC
PNRLYELEKRLSRQLNLARKHHVAPEELPQFHQQLLDEQELLSQQENDHEQLSNAVNTHY
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHH
QQALAIAKRLHQERQYYANELAALITESMHELSMPHGKFAIETIFEPEHLSAEGATRIEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHCCCCCCCCCCCCEEEE
CVTTNPGQPLQALVKVASGGELSRIALAIQVITARKMDTPALIFDEVDVGISGPTAAIVG
EEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH
RLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKQTDGTETETHMHRLDKKARLQELARLL
HHHHHHCCCCEEEEEECCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
GGSEVTKNTLANAKELLAA
CCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3037486; 9205837; 9278503 [H]