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The map label for this gene is secD

Identifier: 51595280

GI number: 51595280

Start: 1123343

End: 1125190

Strand: Direct

Name: secD

Synonym: YPTB0930

Alternate gene names: 51595280

Gene position: 1123343-1125190 (Clockwise)

Preceding gene: 51595279

Following gene: 51595281

Centisome position: 23.68

GC content: 48.81

Gene sequence:

>1848_bases
GTGTTAAACCGTTATCCTTTGTGGAAGTATCTGATGCTGATCGTTGTGATCTTCGTCGGTCTGCTATATGCGCTTCCCAA
CCTTTATGGTGAGGATCCGGCTGTTCAAATCACTGGTGCGCGAGGAATCGCCGCCAGTGAGACAACGCTGGTCCAAGTCC
GTGACGTTTTAGAAAAAGACAACATAGCGAGCAAGTCTATTGCGCTGGAAAACGGTGCAATCCTGGCTCGCTTTAGAGAT
CCTGATGTCCAGCTACGTGCTCGCGAAGCACTGGTGGAGGCGTTGGGTGATAAATATGTTATCGCGCTGAACCTGGCTCC
GGCAACACCTTCCTGGCTTGCCAAATTGGGTGCAGAACCCATGAAATTAGGTCTTGACCTGCGAGGTGGTGTTCATTTCC
TGATGGAAGTGGATATGGATACCGCGCTGGGCAAACTGCAAGAGCAAACGATGGATACCTTACGCACTGATTTGCGTGAG
AAAAATATCCCGTATGCCACAGTACGTAAGCTCGATAACTATGGTGTTGAAGTGCGTTTTCGCGATGATAAAGCGCGCAA
TGATGCTATCAGCTACCTCTCTTCGCGCCATCGTGATTTGGTGTTCAGCTCCAATGGCAGCAACACGCTAAAAGCGGTGA
TGAGTGATGAGCGTTTGCGGGAAGCTCGGGAATATGCGGTTCAACAAAATATTACAATTCTGCGTAACCGAGTTAACCAG
CTAGGTGTTGCAGAGCCGTTAGTCCAACGGCAGGGTTCTGACCGTATTGTTGTTGAACTACCGGGTATTCAAGACACCGC
GCGTGCTAAAGAGATTCTGGGTGCGACTGCAACGTTGGAATTCCGTTTAGTCAACACTAACGTTGATGCTTCTGTCGCAG
CTTCTGGCCGTGTACCTGGCGATTCGGAAGTGAAAAATACCCGTGAAGGCCGCCCGGTTGTCTTGTACAAACGAGTGATC
TTGACCGGTGACCATATTACTGATTCAACCTCCAGTACCGACGAGTATAACCAGGCTCAGGTTAATATCTCGCTCGATAG
TGCAGGGGGGGCGACGATGTCTAATTTTACTAAAGACAATATCGGCAAGCCGATGGCGACTTTATTCGTAGAATATAAAG
ACAGCGGTAAAAAAGATGCGAATGGCCGGTCTATTCTGGTTAAACAAGAAGAAGTTATCAATGTGGCGACCATCCAGTCG
CGTTTAGGTAACAGTTTCCGCATTACCGGCATTGATAACCCAGCTGAAGCGCGGCAACTTTCCCTGTTACTGCGTGCTGG
TGCGTTGATTGCACCTATCCAGATTGTGGAAGAGCGTACTATTGGGCCAACGTTGGGTTCCCAGAATATTGCGCAAGGCT
TAGAAGCCTGCTTATGGGGTCTGGCTGTATCGATCCTGTTTATGGTGGTTTACTACCGTAAGTTTGGTGTGATTGCCAGT
ACTGCACTGATGGCCAACCTGGTGTTAATCGTCGGCGTGATGTCCTTATTACCGGGGGCGACATTAACCATGCCGGGTAT
TGCCGGGATTGTATTGACGCTAGCGGTAGCAGTAGATGCTAACGTACTGATTAACGAGCGAATAAAAGAAGAGTATAGAA
ACGGGCGGACGATCCAGCAAGCGATTCATGAAGGGTACAAGGGTGCCTTCTCAAGTATCGTCGATGCGAACATAACGACG
CTTATCACAGCCATTATTCTTTATGCTGTGGGTACTGGTTCGATTAAAGGCTTTGCTATTACAACGGCAATTGGTGTTGT
AACGTCAATGTTCACCGCAATAGTCGGTACTCGTGCCATCGTCAACCTGCTTTACGGCGGCAAGCGCATTAACAAGCTGT
CTATTTGA

Upstream 100 bases:

>100_bases
CACTACCGAAGTGATGATCAAGCGTGACTTCGTGGCTGCCGTGTTACCGAAAGGTACAATGAAGGCTCTGTAATTTTCGA
TTTTCCCGAAGGGAACTACC

Downstream 100 bases:

>100_bases
GGAGTACGTTGTGGCACAGGATTATACTGTTGAACAACTAAACTATGGCCGTAAAGTCTATGACTTTATGCGCTGGGATT
ACGTTGCTTTCGGCGTTTCA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 615; Mature: 615

Protein sequence:

>615_residues
MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGARGIAASETTLVQVRDVLEKDNIASKSIALENGAILARFRD
PDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLRE
KNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHRDLVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQ
LGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRVI
LTGDHITDSTSSTDEYNQAQVNISLDSAGGATMSNFTKDNIGKPMATLFVEYKDSGKKDANGRSILVKQEEVINVATIQS
RLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIAS
TALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANITT
LITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI

Sequences:

>Translated_615_residues
MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGARGIAASETTLVQVRDVLEKDNIASKSIALENGAILARFRD
PDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLRE
KNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHRDLVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQ
LGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRVI
LTGDHITDSTSSTDEYNQAQVNISLDSAGGATMSNFTKDNIGKPMATLFVEYKDSGKKDANGRSILVKQEEVINVATIQS
RLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIAS
TALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANITT
LITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI
>Mature_615_residues
MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGARGIAASETTLVQVRDVLEKDNIASKSIALENGAILARFRD
PDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLRE
KNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHRDLVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQ
LGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRVI
LTGDHITDSTSSTDEYNQAQVNISLDSAGGATMSNFTKDNIGKPMATLFVEYKDSGKKDANGRSILVKQEEVINVATIQS
RLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIAS
TALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANITT
LITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=615, Percent_Identity=83.5772357723577, Blast_Score=1056, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66818; Mature: 66818

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGARGIAASETTLVQVRDVLEKD
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
NIASKSIALENGAILARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLGAEP
CCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCH
MKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVEVRF
HHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEE
RDDKARNDAISYLSSRHRDLVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQ
CCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPG
CCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHCCEEEEEEEEEECCCCCEEEECCCCCC
DSEVKNTREGRPVVLYKRVILTGDHITDSTSSTDEYNQAQVNISLDSAGGATMSNFTKDN
CCHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHCCCHHH
IGKPMATLFVEYKDSGKKDANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQL
CCCCHHHEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
SLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIAS
HHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQ
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH
AIHEGYKGAFSSIVDANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAI
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VNLLYGGKRINKLSI
HHHHHCCCCCCCCCC
>Mature Secondary Structure
MLNRYPLWKYLMLIVVIFVGLLYALPNLYGEDPAVQITGARGIAASETTLVQVRDVLEKD
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHC
NIASKSIALENGAILARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLGAEP
CCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCH
MKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVEVRF
HHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEE
RDDKARNDAISYLSSRHRDLVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQ
CCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPG
CCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHCCEEEEEEEEEECCCCCEEEECCCCCC
DSEVKNTREGRPVVLYKRVILTGDHITDSTSSTDEYNQAQVNISLDSAGGATMSNFTKDN
CCHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHCCCHHH
IGKPMATLFVEYKDSGKKDANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQL
CCCCHHHEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH
SLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIAS
HHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQ
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH
AIHEGYKGAFSSIVDANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAI
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VNLLYGGKRINKLSI
HHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]