Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 51595149

GI number: 51595149

Start: 959107

End: 960168

Strand: Reverse

Name: rbsC [H]

Synonym: YPTB0799

Alternate gene names: 51595149

Gene position: 960168-959107 (Counterclockwise)

Preceding gene: 51595150

Following gene: 51595148

Centisome position: 20.24

GC content: 51.98

Gene sequence:

>1062_bases
ATGAAAAAGAACCGTTTTCTACCTATCGACGGCACCATTTCCGGCTTGTTAGGGATTTTTTGTCTGGCAACACTGGCCTT
CAGTCTGGCGATGCCTGGCCGTTTCTTTACCGAGAACACCTTTCTGAGTATTGCGTTTCAGTTGCCAGAGTTGGGGTTAC
TGACCTTCGCCATGTTTGTACCGATGCTCAGCGGCGGATTAAACCTGTCGATTATTGGTACCGCAAACCTGACCAGTCTG
TTTATGGCCTGGCTGCTTATCCAATATGTTCCCGCAGATGCCAGTACCACGACACAACTGATGTGGCTACTGCTGGCACT
GATGGGGGCAGCGCTGATTGCCGTGGTTATCGGCACACTGACCGGGTTGATGATCGCCCGTATTGGCGCACATCCCATTT
TAGTGACGTTGGGCAGTATGACCATTATCAGCGGCATCGGTGTTTATCTGACCAAAGGCGCGGCGCTCAGTGGCATGCCA
CCGATTGTTCGCAGTATGGGTTCCGAAGTGGTGATGGGCGTGCCGATCCCGATGATTATTTTCATCGTGGCCTCACTGCT
GCTGGCGCTGTTCTTAGGTAAAACGCGCCTGGGCAAAACGATTTATATGTGCGGCAGCAATATTAACGCCACGTGGTTCA
GCGGTATTCGTACTGACCGGGTCATGATGGCTATCTACACCATGTCCAGTCTGCTGTGTGTACTGGCGGGCCTGATCATG
ATGTCGCGCTTCAACTCTGCGCGTATGGGCTACGGCGACTCTTATTTATTGCTTACCGTGTTGGCTATCGTCTTGGGCGG
AACCAACCCGTTCGGTGGTGTGGGTAAAGTGAGCCATGTGTTCTGCGCTCTGCTGGTATTACAAGTGATCGCCACGGGGC
TGAGCCTACTCGGCGTTAGCCTGCACGTTAATCTGGCGGTCTGGGGTATCACCCTGATCTTCGCCCTGGCCTTTAAGTTT
TTTAAAGAGAAATGGAAAGCCAAACGTGCCATGAGGCAGAACCGTTTGAATTATCTAAAAAATGTCACGCCAAGTGATTG
GGATTCCAGTGAGCGCAGCTAA

Upstream 100 bases:

>100_bases
CAACATCGTGATTGGCATGGTGATCGTCGCCGCCATTTGCGTAACCCACTACAAAAAACGCAAAGAAACTGATGTTGGCT
TTGTCTGACAGGGGTGTTTT

Downstream 100 bases:

>100_bases
CTGTTTATGTAGATAAACACCGCTGCAACGTCAAGTACGAAGGGTTCCCCAAAGTCATTGGCGTTCCAGCAAGGCAGCAA
GAGAACGAATCCCGATGAGC

Product: ABC sugar transporter, permease subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MKKNRFLPIDGTISGLLGIFCLATLAFSLAMPGRFFTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSL
FMAWLLIQYVPADASTTTQLMWLLLALMGAALIAVVIGTLTGLMIARIGAHPILVTLGSMTIISGIGVYLTKGAALSGMP
PIVRSMGSEVVMGVPIPMIIFIVASLLLALFLGKTRLGKTIYMCGSNINATWFSGIRTDRVMMAIYTMSSLLCVLAGLIM
MSRFNSARMGYGDSYLLLTVLAIVLGGTNPFGGVGKVSHVFCALLVLQVIATGLSLLGVSLHVNLAVWGITLIFALAFKF
FKEKWKAKRAMRQNRLNYLKNVTPSDWDSSERS

Sequences:

>Translated_353_residues
MKKNRFLPIDGTISGLLGIFCLATLAFSLAMPGRFFTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSL
FMAWLLIQYVPADASTTTQLMWLLLALMGAALIAVVIGTLTGLMIARIGAHPILVTLGSMTIISGIGVYLTKGAALSGMP
PIVRSMGSEVVMGVPIPMIIFIVASLLLALFLGKTRLGKTIYMCGSNINATWFSGIRTDRVMMAIYTMSSLLCVLAGLIM
MSRFNSARMGYGDSYLLLTVLAIVLGGTNPFGGVGKVSHVFCALLVLQVIATGLSLLGVSLHVNLAVWGITLIFALAFKF
FKEKWKAKRAMRQNRLNYLKNVTPSDWDSSERS
>Mature_353_residues
MKKNRFLPIDGTISGLLGIFCLATLAFSLAMPGRFFTENTFLSIAFQLPELGLLTFAMFVPMLSGGLNLSIIGTANLTSL
FMAWLLIQYVPADASTTTQLMWLLLALMGAALIAVVIGTLTGLMIARIGAHPILVTLGSMTIISGIGVYLTKGAALSGMP
PIVRSMGSEVVMGVPIPMIIFIVASLLLALFLGKTRLGKTIYMCGSNINATWFSGIRTDRVMMAIYTMSSLLCVLAGLIM
MSRFNSARMGYGDSYLLLTVLAIVLGGTNPFGGVGKVSHVFCALLVLQVIATGLSLLGVSLHVNLAVWGITLIFALAFKF
FKEKWKAKRAMRQNRLNYLKNVTPSDWDSSERS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=212, Percent_Identity=29.7169811320755, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790524, Length=286, Percent_Identity=26.9230769230769, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI145693152, Length=209, Percent_Identity=29.1866028708134, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788896, Length=323, Percent_Identity=26.9349845201238, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1790191, Length=208, Percent_Identity=30.7692307692308, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789992, Length=123, Percent_Identity=30.8943089430894, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI87082395, Length=351, Percent_Identity=25.3561253561254, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 38014; Mature: 38014

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNRFLPIDGTISGLLGIFCLATLAFSLAMPGRFFTENTFLSIAFQLPELGLLTFAMFV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEEECCCCHHHHHHHHHH
PMLSGGLNLSIIGTANLTSLFMAWLLIQYVPADASTTTQLMWLLLALMGAALIAVVIGTL
HHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TGLMIARIGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVVMGVPIPMII
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEECCCHHHHH
FIVASLLLALFLGKTRLGKTIYMCGSNINATWFSGIRTDRVMMAIYTMSSLLCVLAGLIM
HHHHHHHHHHHHCCHHHCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
MSRFNSARMGYGDSYLLLTVLAIVLGGTNPFGGVGKVSHVFCALLVLQVIATGLSLLGVS
HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LHVNLAVWGITLIFALAFKFFKEKWKAKRAMRQNRLNYLKNVTPSDWDSSERS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKKNRFLPIDGTISGLLGIFCLATLAFSLAMPGRFFTENTFLSIAFQLPELGLLTFAMFV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEEECCCCHHHHHHHHHH
PMLSGGLNLSIIGTANLTSLFMAWLLIQYVPADASTTTQLMWLLLALMGAALIAVVIGTL
HHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TGLMIARIGAHPILVTLGSMTIISGIGVYLTKGAALSGMPPIVRSMGSEVVMGVPIPMII
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEECCCHHHHH
FIVASLLLALFLGKTRLGKTIYMCGSNINATWFSGIRTDRVMMAIYTMSSLLCVLAGLIM
HHHHHHHHHHHHCCHHHCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
MSRFNSARMGYGDSYLLLTVLAIVLGGTNPFGGVGKVSHVFCALLVLQVIATGLSLLGVS
HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LHVNLAVWGITLIFALAFKFFKEKWKAKRAMRQNRLNYLKNVTPSDWDSSERS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]