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The map label for this gene is nlpD

Identifier: 51595125

GI number: 51595125

Start: 929763

End: 930764

Strand: Direct

Name: nlpD

Synonym: YPTB0775

Alternate gene names: 51595125

Gene position: 929763-930764 (Clockwise)

Preceding gene: 51595124

Following gene: 51595126

Centisome position: 19.6

GC content: 48.5

Gene sequence:

>1002_bases
ATGAGCACAGGAAGCCCAATGATTAGATTACGCCGAGTCGCGGCATGTACGGTTGTGAGTTTGTGGTTAGTCGGTTGTAC
CAATGATAATTCAACATCTGCACCCATCAGCAGTGTGGGGGGCGATCGTTCAGGGACGATGTTGAGTGGAGCGAAAACCG
ATAGCTCTGGGGGGCGCATAGTTTATAACCGCAGTTACGACAATATCCCCAAAGGAAGCTACAGTGGTAATACCTATACC
GTTAAGCGTGGTGACACGCTGTTTTATATCGCTTGGATAACAGGAAATGACTTCCGTGATTTGGCGGCAAAAAATAATAT
TGCAGAACCCTATAGCCTGAATGTGGGGCAATCTATTCAATTGGGTAATGGGTCTGGTGGCGGTATGTTAGCCGCCACTG
ATGCCACATCAGGCGGAATAGCACAACCGCCGTCAAATATTCAGAACACAACTCCTATTCAGAACACAACTACAACGGTT
GATTCTCAATCAACTAGCGCGTATTCTGGAAACTCGGGTAAACAGAATGTTGGCAAAATGTTGCCATCATCTGGTGCGGT
TGTCGCTACAACAGCACCTGTTACCGCACCAAGCAGTTCTATCAGTGAACCAGCCAGCAATGGTGGTCCAGTTAGTGGCT
GGAGATGGCCAACCGATGGTAAAACGATCGATAGCTTCTCTGCTTCCGAAGGGGGCAATAAAGGGATTGATATCGCCGGT
TCTCGTGGGCAACCTATCCTCGCCACAGCAAGTGGCCGGGTTGTGTATGCTGGGAACGCACTGCGTGGTTACGGTAATCT
AATCATCATCAAACACAATGATGATTACCTGAGCGCCTACGCTCATAACGATACAATGCTGGTCCGGGAACAACAAGAAG
TGAAGGCGGGTCAAAAAATAGCAACCATGGGTAGCACCGGAACCAGTTCAGTTAGATTGCATTTTGAAATTCGTTACAAG
GGGAAATCCGTAAACCCGCTGCGTTACCTTCCGCAGCGATAG

Upstream 100 bases:

>100_bases
AGTCTTTTCTCTTTGAGTCTCTTCTATTTCAGCCTTCACCTTTAGCTACCGTGTAAAGGTATTTGGACATATCGTTTATT
ATTGCTGTCATGGGGGAAGC

Downstream 100 bases:

>100_bases
ATTGGGCAGAATACGCTGTATTCTGCTCGCCGGATTCACGGGTAGGAGCAGCATATGAGCCAAAGTACGCTGAAAGTTAA
CGAGTTGCATGAAGATGCTG

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSTGSPMIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSGAKTDSSGGRIVYNRSYDNIPKGSYSGNTYT
VKRGDTLFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQLGNGSGGGMLAATDATSGGIAQPPSNIQNTTPIQNTTTTV
DSQSTSAYSGNSGKQNVGKMLPSSGAVVATTAPVTAPSSSISEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAG
SRGQPILATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSVRLHFEIRYK
GKSVNPLRYLPQR

Sequences:

>Translated_333_residues
MSTGSPMIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSGAKTDSSGGRIVYNRSYDNIPKGSYSGNTYT
VKRGDTLFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQLGNGSGGGMLAATDATSGGIAQPPSNIQNTTPIQNTTTTV
DSQSTSAYSGNSGKQNVGKMLPSSGAVVATTAPVTAPSSSISEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAG
SRGQPILATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSVRLHFEIRYK
GKSVNPLRYLPQR
>Mature_332_residues
STGSPMIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSGAKTDSSGGRIVYNRSYDNIPKGSYSGNTYTV
KRGDTLFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQLGNGSGGGMLAATDATSGGIAQPPSNIQNTTPIQNTTTTVD
SQSTSAYSGNSGKQNVGKMLPSSGAVVATTAPVTAPSSSISEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAGS
RGQPILATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTGTSSVRLHFEIRYKG
KSVNPLRYLPQR

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=387, Percent_Identity=55.8139534883721, Blast_Score=392, Evalue=1e-110,
Organism=Escherichia coli, GI87082174, Length=262, Percent_Identity=46.1832061068702, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI87082297, Length=145, Percent_Identity=35.1724137931034, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI87081989, Length=96, Percent_Identity=36.4583333333333, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 34748; Mature: 34617

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGSPMIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSGAKTDSSGGRI
CCCCCHHHHHHHHHHHHEEEEEEEEECCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCEE
VYNRSYDNIPKGSYSGNTYTVKRGDTLFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQ
EEECCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHCCCCCCCEEECCCCEEE
LGNGSGGGMLAATDATSGGIAQPPSNIQNTTPIQNTTTTVDSQSTSAYSGNSGKQNVGKM
ECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHH
LPSSGAVVATTAPVTAPSSSISEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAG
CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEC
SRGQPILATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKI
CCCCEEEEECCCCEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEE
ATMGSTGTSSVRLHFEIRYKGKSVNPLRYLPQR
EEECCCCCCEEEEEEEEEECCCCCCHHHCCCCC
>Mature Secondary Structure 
STGSPMIRLRRVAACTVVSLWLVGCTNDNSTSAPISSVGGDRSGTMLSGAKTDSSGGRI
CCCCHHHHHHHHHHHHEEEEEEEEECCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCEE
VYNRSYDNIPKGSYSGNTYTVKRGDTLFYIAWITGNDFRDLAAKNNIAEPYSLNVGQSIQ
EEECCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHCCCCCCCEEECCCCEEE
LGNGSGGGMLAATDATSGGIAQPPSNIQNTTPIQNTTTTVDSQSTSAYSGNSGKQNVGKM
ECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHH
LPSSGAVVATTAPVTAPSSSISEPASNGGPVSGWRWPTDGKTIDSFSASEGGNKGIDIAG
CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEC
SRGQPILATASGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKI
CCCCEEEEECCCCEEEECCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHHHHHCCCEE
ATMGSTGTSSVRLHFEIRYKGKSVNPLRYLPQR
EEECCCCCCEEEEEEEEEECCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]