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The map label for this gene is ydeY

Identifier: 51594902

GI number: 51594902

Start: 649762

End: 650817

Strand: Reverse

Name: ydeY

Synonym: YPTB0551

Alternate gene names: 51594902

Gene position: 650817-649762 (Counterclockwise)

Preceding gene: 51594903

Following gene: 51594901

Centisome position: 13.72

GC content: 53.12

Gene sequence:

>1056_bases
ATGCTGAAATTTATTCAGAATAATCGTGAAGGTACCGCGCTACTGGCCATTCTCACCCTATTTGCCCTATTGGGGATTAT
TGACCGCAACTATTTCAGCTTGCAGACCTTCACCATGATTTTCAGCAGCGCACAGATCCTGATCCTGCTGGCCATCGGGG
CCACCCTGGTGATGTTGACCCGCAATATCGACGTTTCCGTGGGCTCCATCACCGGTTTATGCGCGGTGACCGTCGGTATG
GCGCTGAATGCCGGTTTTGGCCTGGTGGCATCTTGCTTGTTCGCCTTGTTGGTCGGCATGGTAGCGGGCTTTTTTAACGG
CATTTTAGTGACCTGGCTGCGCATTCCGGCCATTGTCGCCACGCTGGGTACGCTTGGGTTATACCGTGGCCTAATGCTAC
TGCTAACAGGCGGTAAGTGGATCGAAGGATTACCGGCGGACCTGAAAAGTTTATCAACCCCCATTCTGTTTTCTATCTCG
CCCATTGGCTGGCTAACGATGTTGCTGATCCTTTCTATGGCCTGGCTGTTGGGCAACACCGCCTTTGGCCGCAGTTTCTA
TGCCACGGGGGATAACTTACAAGGGGCGCGTCAGTTGGGGGTCCGTACCGACAGTATCCGCATTTTTGCCTTCTCAATGA
ACGGCGTGATGGCCGCACTGGCTGGGATCGTCTTCGCTTCCCAAATTGGCTTTATCCCTAACCAAACAGGCAACGGGCTG
GAAATGAAGGCCATTGCCGCCTGCGTGTTGGGCGGGATCAGCCTGCTTGGTGGGACGGGGACCATTATTGGTGCCATTTT
GGGCGCTTTCCTGCTGACACAAATCGATAGCGTACTGGTGTTACTGCGCCTACCGGCCTGGTGGAATGACTTTATTGCCG
GTTTGGTGCTGCTGGGGGTGTTGGTATTCGATGGCCGTCTGCGTTGTGCTGTTGAGCGTAATATCCGCCAACAGAAATAT
GCCCGCTTCACTGCCCAAGCCATTATTAGTGATAAAAAACCAACCGTTAGCGATAACAACCCAGCAGCTAGCAATAAAAA
GAAGGCGGCACTATGA

Upstream 100 bases:

>100_bases
TGAATGTCGATACCATCATGCATATGGCGTTTGGTGAGCACCGTTCTGTGAGTGAACCTCAGAGCGGCACCGCCTCCTCG
GCTGAAAATAAGGGCACATC

Downstream 100 bases:

>100_bases
ATCTCTACCGACGTTATGGATGGGAACTGACTCTGGCGGCGCTGCTGGTGCTGGAAATCCTGCTATTTGGTTTATCGAAT
TCGCGCATGTTGGATATCAA

Product: ABC sugar transporter, permease subunit

Products: NA

Alternate protein names: AI-2 import system permease protein lsrC

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MLKFIQNNREGTALLAILTLFALLGIIDRNYFSLQTFTMIFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVTVGM
ALNAGFGLVASCLFALLVGMVAGFFNGILVTWLRIPAIVATLGTLGLYRGLMLLLTGGKWIEGLPADLKSLSTPILFSIS
PIGWLTMLLILSMAWLLGNTAFGRSFYATGDNLQGARQLGVRTDSIRIFAFSMNGVMAALAGIVFASQIGFIPNQTGNGL
EMKAIAACVLGGISLLGGTGTIIGAILGAFLLTQIDSVLVLLRLPAWWNDFIAGLVLLGVLVFDGRLRCAVERNIRQQKY
ARFTAQAIISDKKPTVSDNNPAASNKKKAAL

Sequences:

>Translated_351_residues
MLKFIQNNREGTALLAILTLFALLGIIDRNYFSLQTFTMIFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVTVGM
ALNAGFGLVASCLFALLVGMVAGFFNGILVTWLRIPAIVATLGTLGLYRGLMLLLTGGKWIEGLPADLKSLSTPILFSIS
PIGWLTMLLILSMAWLLGNTAFGRSFYATGDNLQGARQLGVRTDSIRIFAFSMNGVMAALAGIVFASQIGFIPNQTGNGL
EMKAIAACVLGGISLLGGTGTIIGAILGAFLLTQIDSVLVLLRLPAWWNDFIAGLVLLGVLVFDGRLRCAVERNIRQQKY
ARFTAQAIISDKKPTVSDNNPAASNKKKAAL
>Mature_351_residues
MLKFIQNNREGTALLAILTLFALLGIIDRNYFSLQTFTMIFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVTVGM
ALNAGFGLVASCLFALLVGMVAGFFNGILVTWLRIPAIVATLGTLGLYRGLMLLLTGGKWIEGLPADLKSLSTPILFSIS
PIGWLTMLLILSMAWLLGNTAFGRSFYATGDNLQGARQLGVRTDSIRIFAFSMNGVMAALAGIVFASQIGFIPNQTGNGL
EMKAIAACVLGGISLLGGTGTIIGAILGAFLLTQIDSVLVLLRLPAWWNDFIAGLVLLGVLVFDGRLRCAVERNIRQQKY
ARFTAQAIISDKKPTVSDNNPAASNKKKAAL

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily

Homologues:

Organism=Escherichia coli, GI1787793, Length=350, Percent_Identity=75.7142857142857, Blast_Score=479, Evalue=1e-136,
Organism=Escherichia coli, GI1790191, Length=311, Percent_Identity=31.1897106109325, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789992, Length=348, Percent_Identity=27.0114942528736, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI145693152, Length=267, Percent_Identity=30.7116104868914, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1788896, Length=304, Percent_Identity=29.2763157894737, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790524, Length=301, Percent_Identity=27.906976744186, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082395, Length=306, Percent_Identity=31.0457516339869, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI145693214, Length=283, Percent_Identity=34.6289752650177, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787794, Length=293, Percent_Identity=28.3276450511945, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788471, Length=331, Percent_Identity=28.0966767371601, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LSRC_YERPB (B2K3G0)

Other databases:

- EMBL:   CP001048
- RefSeq:   YP_001871016.1
- GeneID:   6261094
- GenomeReviews:   CP001048_GR
- KEGG:   ypb:YPTS_0575
- HOGENOM:   HBG663180
- OMA:   GSGLEMK
- ProtClustDB:   PRK15432
- InterPro:   IPR001851

Pfam domain/function: PF02653 BPD_transp_2

EC number: NA

Molecular weight: Translated: 37278; Mature: 37278

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x17661f50)-; HASH(0x18c53aa4)-; HASH(0x18be4a20)-; HASH(0x18fbabc8)-; HASH(0x188f3f00)-; HASH(0x18f80e04)-; HASH(0x18e60a38)-; HASH(0x18e1ee38)-; HASH(0x189036b4)-;

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFIQNNREGTALLAILTLFALLGIIDRNYFSLQTFTMIFSSAQILILLAIGATLVMLT
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNIDVSVGSITGLCAVTVGMALNAGFGLVASCLFALLVGMVAGFFNGILVTWLRIPAIVA
CCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGTLGLYRGLMLLLTGGKWIEGLPADLKSLSTPILFSISPIGWLTMLLILSMAWLLGNT
HHHHHHHHHHHHHHHCCCCHHCCCCHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCH
AFGRSFYATGDNLQGARQLGVRTDSIRIFAFSMNGVMAALAGIVFASQIGFIPNQTGNGL
HCCCCEECCCCCCCHHHHHCCEECCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCC
EMKAIAACVLGGISLLGGTGTIIGAILGAFLLTQIDSVLVLLRLPAWWNDFIAGLVLLGV
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LVFDGRLRCAVERNIRQQKYARFTAQAIISDKKPTVSDNNPAASNKKKAAL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
>Mature Secondary Structure
MLKFIQNNREGTALLAILTLFALLGIIDRNYFSLQTFTMIFSSAQILILLAIGATLVMLT
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNIDVSVGSITGLCAVTVGMALNAGFGLVASCLFALLVGMVAGFFNGILVTWLRIPAIVA
CCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGTLGLYRGLMLLLTGGKWIEGLPADLKSLSTPILFSISPIGWLTMLLILSMAWLLGNT
HHHHHHHHHHHHHHHCCCCHHCCCCHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHCCH
AFGRSFYATGDNLQGARQLGVRTDSIRIFAFSMNGVMAALAGIVFASQIGFIPNQTGNGL
HCCCCEECCCCCCCHHHHHCCEECCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCC
EMKAIAACVLGGISLLGGTGTIIGAILGAFLLTQIDSVLVLLRLPAWWNDFIAGLVLLGV
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LVFDGRLRCAVERNIRQQKYARFTAQAIISDKKPTVSDNNPAASNKKKAAL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA