| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is hsdM [C]
Identifier: 51594888
GI number: 51594888
Start: 633337
End: 635928
Strand: Reverse
Name: hsdM [C]
Synonym: YPTB0537
Alternate gene names: 51594888
Gene position: 635928-633337 (Counterclockwise)
Preceding gene: 51594889
Following gene: 51594887
Centisome position: 13.4
GC content: 45.68
Gene sequence:
>2592_bases GTGAATAAACAGCAGCTTGCGGCAAAAATCTGGGAATCCGCCAACCAGATGCGTTCTAAAATTGAAGCCAATGAATACAA AGATTACATACTCGGCTTTATCTTCTACAAGTACCTAAGCGACCAGTTGGTGCAGTTTGTCACCAGACAGGGTATGACGC CCGAAGATATCAAAGCCCTCAATGAAGAAGACGCCGACACCGTTAAATACGTGCAAGGCAACCTGGGCTACTTTATTGCC TACGATAATCTGTTTTCTACCTGGGTTGATTCCACATCCGACTTTGATGAATCTAACGTACGTGATGCGCTCTCAGCCTT TAGCCGTTTGATTTCGCCAACTTACAAAAAACTGTTTGAAGGCATTTTTACCACCTTAGAAACCGGTTTAAGCAAACTGG GTGAAAGTGCGGGCAAACGCACCAAAGCCATCAGCGACTTACTGCACCTGATCAAAAGCATCCCCATGAATGGTAATCAA GGGTATGACGTACTGGGCTACATTTACGAATACCTGCTTGAGAAATTTGCCGCCAATGCAGGTAAAAAAGCCGGTGAGTT TTACACGCCTCATGAAGTCTCAGTACTCATGTCGAACATCATTGCCTACGAGTTAAAACACAAAGATACCATCAAAATTT ACGACCCGACCTCCGGCTCGGGTTCGTTGCTGATCAATATCGGTGAGGCATTCGAGAAATACGCTAAAAACAAAGACAGC ATCACCTATTACGCCCAAGAGTTAAAAGCCAATACCTACAACCTAACCCGTATGAACCTCATCATGCGCGGTATCAAAGC CAGCAACATTAAAACCCGTAATGGCGACACCCTGGAAGACGATTGGCCGTTTTTTGATGATAGCGATCCTCAAGGATCAT ATTACGCCTTGCACGTCGATGCCGTAGTATCCAACCCGCCTTACTCACAAAACTGGGACCCCAGCTTTAAAGACAGCGAT CCACGCTATTCACGTTTTGGCCTGGCCCCTAAAACCAAAGCCGATTTTGCTTTTTTGCTGCACGACCTCTACCACCTAAA ACCCGATGGCATTATGGCCATTGTTCTGCCCCATGGTGTCTTGTTCCGTGGCGGTGAAGAAGGTCAAATTCGCAAGCAAC TCATTGAGCAGAATCACATTGATACTATTATCGGTTTACCGGCCAATATCTTTTTTGGTACCGGCATTCCCACAGTGATT TTGGTACTCAAGCAAAAACGCCAAAACACCGATGTATTGGTGGTTGATGCCTCCAAACACTTTATGAAAGAAGGTAAAAA CAACAAACTGCAAGCCAGTGATATCAAACGCATTACTGATGCAGTGATTAAGCGTGAAAGTATCGACAAGTTCTCACAGC TGGTGAGCAAACAAACCCTGCGCGACAACGGCTACAATCTCAACATACCGCGCTATGTCGATTCCTCTGCGGCGACACCA AGCTGGGATTTACACGCCACCATGCTCGGCGGCATCCCCAACAGCGAAATTGCCGAGCTACACAATTATTGGCAAGCCTT CCCGCAATTGCACGATACTCTGTTTACGCCAAAATCCGCCGCTTACAGTGAGCTGGCTATTGCCAAACAAAACGTCAACG CCAGTATTAGTGGGCATCCGCAAGTGTTAGCGTTTATCAGCGCCTACAACCAAGCCTTTAATGGCTTTGATGATTACCTA AACACCCAGTTAATACAAAACTGGCACAGCGTAAAGCGTAACCAACAAGAGGCGGTATTAAGTACCGAGCTATTTACTCG CTTAGCTCCCATTGCCCTCATCGACAAATACCAGGCTTACCAATTTCTAAACAACCAATGGCAGCTCATCAGCGCCGATT TAGAAATGATGCAAACCGAAGGCTTTGCCGCCGCCAAACAAGTTGATGCCAATATTGTTATAAAGAAAAAAAACGGCCAG GACACTGAAGTGCAAGACGGCTGGAAAGGCCACATACTGCCGTTTGATTTAGTGCAACAAACTTACTTAAGTGATGACTT ACAAGCTCTGGCCGCAAAAGAAACCCGCCTGGCTGAAATCGCCAGTACGCTGGAAGAAATTTTAGAATCCCTAACCGAAG AAGAAAAAGAACAAGATACGGTCAAAGAAAGCCAAGACGGCTTTGCCAATGCCGAATTAAGTAAGGCAGCCAAAGTCTTC TTGAAAGAGCAAAAAGATGCCAAAACTAAATTTGCCGAAGACAGCTATGAAGCCAAAATCATTCGCGCGAACAAATTAAT CGATGAAGAAAAAACCCTGAAAAAAACCGTCAAAGATGCCGCCACTGCCCTGCACTTAAAAACCAAAACAACTATCGAAG CATTAACTGATGAACAAGTGAACAACCTGCTGCACCTTAAATGGATTGCGCCATTAAGCACCGAACTCGCCGCCATGCCA AACGCCGTGATTAACCAGCTAACCCGCCAAGTACAAGCCCTTGCTGATAAATACGCTGTCACTTACTCGCAAGTGGCCAA TGAGATAAAAAACACCGAGCAAGAACTGGCGCAGATGATGAGCGAGCTAACAGGTAATGAATTTGATATGCAGGGCTTGA ATGAGCTTACCCGCTTATTGAAGGGCGAATAA
Upstream 100 bases:
>100_bases CATCAACGTGCCCCCGCTAGCAAGAAGCGCCTATCAGACGTACAATCAAAACCCTAAAATAGCCCTTTCCAAAAAAGAAT TGCTTTTAACAGGACTTATA
Downstream 100 bases:
>100_bases GATGAGTGTCGAGAAGAAAGTGCCTGAAATTCGGTTTAAAGGGTTTAGTGGGGCGTGGGTTGAAAATAATCTAGGTGAAT TAATAGATATTAGATCTGCC
Product: type I restriction-modification system, methyltransferase subunit (N-6 DNA methylase)
Products: NA
Alternate protein names: M.MpnORFDP [H]
Number of amino acids: Translated: 863; Mature: 863
Protein sequence:
>863_residues MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALNEEDADTVKYVQGNLGYFIA YDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQ GYDVLGYIYEYLLEKFAANAGKKAGEFYTPHEVSVLMSNIIAYELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPFFDDSDPQGSYYALHVDAVVSNPPYSQNWDPSFKDSD PRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGVLFRGGEEGQIRKQLIEQNHIDTIIGLPANIFFGTGIPTVI LVLKQKRQNTDVLVVDASKHFMKEGKNNKLQASDIKRITDAVIKRESIDKFSQLVSKQTLRDNGYNLNIPRYVDSSAATP SWDLHATMLGGIPNSEIAELHNYWQAFPQLHDTLFTPKSAAYSELAIAKQNVNASISGHPQVLAFISAYNQAFNGFDDYL NTQLIQNWHSVKRNQQEAVLSTELFTRLAPIALIDKYQAYQFLNNQWQLISADLEMMQTEGFAAAKQVDANIVIKKKNGQ DTEVQDGWKGHILPFDLVQQTYLSDDLQALAAKETRLAEIASTLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKVF LKEQKDAKTKFAEDSYEAKIIRANKLIDEEKTLKKTVKDAATALHLKTKTTIEALTDEQVNNLLHLKWIAPLSTELAAMP NAVINQLTRQVQALADKYAVTYSQVANEIKNTEQELAQMMSELTGNEFDMQGLNELTRLLKGE
Sequences:
>Translated_863_residues MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALNEEDADTVKYVQGNLGYFIA YDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQ GYDVLGYIYEYLLEKFAANAGKKAGEFYTPHEVSVLMSNIIAYELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPFFDDSDPQGSYYALHVDAVVSNPPYSQNWDPSFKDSD PRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGVLFRGGEEGQIRKQLIEQNHIDTIIGLPANIFFGTGIPTVI LVLKQKRQNTDVLVVDASKHFMKEGKNNKLQASDIKRITDAVIKRESIDKFSQLVSKQTLRDNGYNLNIPRYVDSSAATP SWDLHATMLGGIPNSEIAELHNYWQAFPQLHDTLFTPKSAAYSELAIAKQNVNASISGHPQVLAFISAYNQAFNGFDDYL NTQLIQNWHSVKRNQQEAVLSTELFTRLAPIALIDKYQAYQFLNNQWQLISADLEMMQTEGFAAAKQVDANIVIKKKNGQ DTEVQDGWKGHILPFDLVQQTYLSDDLQALAAKETRLAEIASTLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKVF LKEQKDAKTKFAEDSYEAKIIRANKLIDEEKTLKKTVKDAATALHLKTKTTIEALTDEQVNNLLHLKWIAPLSTELAAMP NAVINQLTRQVQALADKYAVTYSQVANEIKNTEQELAQMMSELTGNEFDMQGLNELTRLLKGE >Mature_863_residues MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALNEEDADTVKYVQGNLGYFIA YDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQ GYDVLGYIYEYLLEKFAANAGKKAGEFYTPHEVSVLMSNIIAYELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPFFDDSDPQGSYYALHVDAVVSNPPYSQNWDPSFKDSD PRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGVLFRGGEEGQIRKQLIEQNHIDTIIGLPANIFFGTGIPTVI LVLKQKRQNTDVLVVDASKHFMKEGKNNKLQASDIKRITDAVIKRESIDKFSQLVSKQTLRDNGYNLNIPRYVDSSAATP SWDLHATMLGGIPNSEIAELHNYWQAFPQLHDTLFTPKSAAYSELAIAKQNVNASISGHPQVLAFISAYNQAFNGFDDYL NTQLIQNWHSVKRNQQEAVLSTELFTRLAPIALIDKYQAYQFLNNQWQLISADLEMMQTEGFAAAKQVDANIVIKKKNGQ DTEVQDGWKGHILPFDLVQQTYLSDDLQALAAKETRLAEIASTLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKVF LKEQKDAKTKFAEDSYEAKIIRANKLIDEEKTLKKTVKDAATALHLKTKTTIEALTDEQVNNLLHLKWIAPLSTELAAMP NAVINQLTRQVQALADKYAVTYSQVANEIKNTEQELAQMMSELTGNEFDMQGLNELTRLLKGE
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=337, Percent_Identity=26.1127596439169, Blast_Score=92, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 - InterPro: IPR004546 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 97322; Mature: 97322
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC NEEDADTVKYVQGNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFE CCCCCHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHH GIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQGYDVLGYIYEYLLEKFAANA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC GKKAGEFYTPHEVSVLMSNIIAYELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEHHHHHHHHHCCCCC ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPFFDDSDPQGSYYALHVD HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE AVVSNPPYSQNWDPSFKDSDPRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGV EEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCE LFRGGEEGQIRKQLIEQNHIDTIIGLPANIFFGTGIPTVILVLKQKRQNTDVLVVDASKH EEECCCCCHHHHHHHHHCCCCHHHCCCCHHEECCCHHHHHHHHHHHCCCCCEEEEECHHH FMKEGKNNKLQASDIKRITDAVIKRESIDKFSQLVSKQTLRDNGYNLNIPRYVDSSAATP HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC SWDLHATMLGGIPNSEIAELHNYWQAFPQLHDTLFTPKSAAYSELAIAKQNVNASISGHP CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCH QVLAFISAYNQAFNGFDDYLNTQLIQNWHSVKRNQQEAVLSTELFTRLAPIALIDKYQAY HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH QFLNNQWQLISADLEMMQTEGFAAAKQVDANIVIKKKNGQDTEVQDGWKGHILPFDLVQQ HHHCCCCEEHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHH TYLSDDLQALAAKETRLAEIASTLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH LKEQKDAKTKFAEDSYEAKIIRANKLIDEEKTLKKTVKDAATALHLKTKTTIEALTDEQV HHHHHHHHHHHCCCCCCEEEEHHHHHHCHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHH NNLLHLKWIAPLSTELAAMPNAVINQLTRQVQALADKYAVTYSQVANEIKNTEQELAQMM HCEEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SELTGNEFDMQGLNELTRLLKGE HHHCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC NEEDADTVKYVQGNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFE CCCCCHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHH GIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQGYDVLGYIYEYLLEKFAANA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC GKKAGEFYTPHEVSVLMSNIIAYELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEHHHHHHHHHCCCCC ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPFFDDSDPQGSYYALHVD HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE AVVSNPPYSQNWDPSFKDSDPRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGV EEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCE LFRGGEEGQIRKQLIEQNHIDTIIGLPANIFFGTGIPTVILVLKQKRQNTDVLVVDASKH EEECCCCCHHHHHHHHHCCCCHHHCCCCHHEECCCHHHHHHHHHHHCCCCCEEEEECHHH FMKEGKNNKLQASDIKRITDAVIKRESIDKFSQLVSKQTLRDNGYNLNIPRYVDSSAATP HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC SWDLHATMLGGIPNSEIAELHNYWQAFPQLHDTLFTPKSAAYSELAIAKQNVNASISGHP CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCH QVLAFISAYNQAFNGFDDYLNTQLIQNWHSVKRNQQEAVLSTELFTRLAPIALIDKYQAY HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH QFLNNQWQLISADLEMMQTEGFAAAKQVDANIVIKKKNGQDTEVQDGWKGHILPFDLVQQ HHHCCCCEEHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHH TYLSDDLQALAAKETRLAEIASTLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH LKEQKDAKTKFAEDSYEAKIIRANKLIDEEKTLKKTVKDAATALHLKTKTTIEALTDEQV HHHHHHHHHHHCCCCCCEEEEHHHHHHCHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHH NNLLHLKWIAPLSTELAAMPNAVINQLTRQVQALADKYAVTYSQVANEIKNTEQELAQMM HCEEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SELTGNEFDMQGLNELTRLLKGE HHHCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8948633 [H]