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The map label for this gene is ddpA [H]

Identifier: 51594876

GI number: 51594876

Start: 613837

End: 615417

Strand: Reverse

Name: ddpA [H]

Synonym: YPTB0524

Alternate gene names: 51594876

Gene position: 615417-613837 (Counterclockwise)

Preceding gene: 51594878

Following gene: 51594875

Centisome position: 12.97

GC content: 48.89

Gene sequence:

>1581_bases
TTGGGAGTCTCAATGAAAGCAAAAGTTCTGTCATTATTCGTTCTGGCAGCGTTATCTGGCGGCACATTGGCAGCAACGCC
GCCGGATACGCTGATAGTCGTGCAATCCCTGGATGACATCGTCAGCCTTGACCCCGCAGAAAGTAACGAGCTGTCTAGCA
TTCAGACAGTACCGAGCCTCTATCAGCGCTTAGTTCAAGCCGACCGCGATAACCCGGCAAAAGTAGTACCCGTCCTGGCC
GAAAGCTGGGAAGGCGATGCCGCAGCCAAAACATTAACGGTCAAATTGCGTCCACAGGCGGTATTTGCATCGGGTAATCC
GGTACAAGCCGATGACGTCATTTATTCTTTCACCCGCGCAGTGAAAATGAATCGCTCACCTGCTTTTATTCTCAACGTCT
TGGGCTGGCAGGCTGATAACATCGATCAACACCTAAAGAAAATTGATAATAATACCGTGCAAGTAAGCTGGAGTGCAGAT
GTCAGCCCAGCGGTTGCCTTGAATATTTTATCAACGCCCATTGCATCCATTGTTGATAAAAAAACCGTGACGGCGAATAC
CAAAGATGACGATTACGGTAATGCGTGGCTCAAAATGCACTCTGCCGGTAGCGGCGCCTTCAAAATGCGGGTTTATCAGC
CGCACCAAGCCATTGTGCTGGATGCCAACCCTACGTCACCGGGTAATCAGCCATTAATTAAGAATATTATTATTAAAAAC
GTGCCTGACCCCAGTGCCCGCCGCCTGTTAATTCAACAAGGTGATGCTGATATTGCACGGGAATTAGGGCCGGACCAAAT
TACTGCGCTGAAAACACAGGCCGGCGTCAAGGTCGTTGAAATCCCATCAGCAGAACAAAACTATTTGGTGTTTAACACCG
CTAATGCCGCTAACCCGCTGCTGAGCAGGCCAGAACTCTGGCAAGCAGCCCGTTATCTGGTGGATTACCAAGGTATTACC
AAAGATCTGTTGAAAGATCAGTATTTCATTCATCAAAGCTTCCTCCCCGTCGGTTTGCCTGGGGCATTGGCAAGCAATCC
ATTCACTTTTGATCCGGCCACCGCCAAAAAAATTCTGGCTAAAGCGGGCATTAAAGATGCCACACTGACACTGGATGTTG
AGAACAAACCCCCGTTTATCACCATTGCTCAGTCGTTACAGGCCAGCTTTGCGCAGGGGGGGGTGAAACTGGTATTGCTG
CCAGCAGCAGGTAGCCAAGTTTATGGTCGGGTGCGGGCTAAACAGCATCAATCGGCGATTCGCCTGTGGATCCCGGATTA
TTTCGATGCACACTCCAATGCCAGCACCTTCGCTTATAACGACGGTAAAAGCAGTACGGTGGCGGGCCTAAACGGCTGGG
TTATTCCTGAACTGAATAAGCAAACACTGGCTGCCGTCGCTGAAGCAGATCCAGAAAAACGGACTCAGTTGTACACCCAG
TTACAGCAGGAACTGCAGCAAAACTCGCCTTATATCTTTATTGATCAAGCCAAAGCACAAGTTGTGTTACGAGATAATGT
AAAAGGCTATCAACAAGGTCTGAATGCCGATATGGTCTATTATGATCGTGTCAGTAAATAA

Upstream 100 bases:

>100_bases
ATTATGGTGGCAAGCTGCGGTGAAATAAATAAAAAAACACTCATTTTCTATCGATGTTAACTACTTAATACTAGAAACAC
GCGATGGCGGTAATCTATTC

Downstream 100 bases:

>100_bases
GACCCTTGTGCTGACTTATTTGTGAAATGAGTTAGATGTGATATTAGTTATTTGTGGAACACATGTAACTCAAGCGACAA
GCGAGCCGATAGTCAATGTC

Product: ABC transporter, periplasmic oligo-dipeptide/nickel binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 526; Mature: 525

Protein sequence:

>526_residues
MGVSMKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSLYQRLVQADRDNPAKVVPVLA
ESWEGDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRAVKMNRSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSAD
VSPAVALNILSTPIASIVDKKTVTANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKN
VPDPSARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPLLSRPELWQAARYLVDYQGIT
KDLLKDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILAKAGIKDATLTLDVENKPPFITIAQSLQASFAQGGVKLVLL
PAAGSQVYGRVRAKQHQSAIRLWIPDYFDAHSNASTFAYNDGKSSTVAGLNGWVIPELNKQTLAAVAEADPEKRTQLYTQ
LQQELQQNSPYIFIDQAKAQVVLRDNVKGYQQGLNADMVYYDRVSK

Sequences:

>Translated_526_residues
MGVSMKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSLYQRLVQADRDNPAKVVPVLA
ESWEGDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRAVKMNRSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSAD
VSPAVALNILSTPIASIVDKKTVTANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKN
VPDPSARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPLLSRPELWQAARYLVDYQGIT
KDLLKDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILAKAGIKDATLTLDVENKPPFITIAQSLQASFAQGGVKLVLL
PAAGSQVYGRVRAKQHQSAIRLWIPDYFDAHSNASTFAYNDGKSSTVAGLNGWVIPELNKQTLAAVAEADPEKRTQLYTQ
LQQELQQNSPYIFIDQAKAQVVLRDNVKGYQQGLNADMVYYDRVSK
>Mature_525_residues
GVSMKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSLYQRLVQADRDNPAKVVPVLAE
SWEGDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRAVKMNRSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSADV
SPAVALNILSTPIASIVDKKTVTANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKNV
PDPSARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPLLSRPELWQAARYLVDYQGITK
DLLKDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILAKAGIKDATLTLDVENKPPFITIAQSLQASFAQGGVKLVLLP
AAGSQVYGRVRAKQHQSAIRLWIPDYFDAHSNASTFAYNDGKSSTVAGLNGWVIPELNKQTLAAVAEADPEKRTQLYTQL
QQELQQNSPYIFIDQAKAQVVLRDNVKGYQQGLNADMVYYDRVSK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=520, Percent_Identity=31.3461538461538, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI1789966, Length=475, Percent_Identity=25.4736842105263, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1787052, Length=498, Percent_Identity=24.6987951807229, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1787551, Length=533, Percent_Identity=23.6397748592871, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1789887, Length=522, Percent_Identity=24.5210727969349, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787495, Length=530, Percent_Identity=25.6603773584906, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57138; Mature: 57006

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVSMKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSL
CCCCHHHHHHHHHHHHHHCCCEEECCCCCCEEEEECHHHHHCCCCCCCCCHHHHHHHHHH
YQRLVQADRDNPAKVVPVLAESWEGDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRA
HHHHHHCCCCCCCEEEEHHHCCCCCCCCEEEEEEEEECEEEEECCCCCCHHHHHHHHHHH
VKMNRSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSADVSPAVALNILSTPIASIVDK
HHCCCCCCEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
KTVTANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKN
CEEECCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCC
VPDPSARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPL
CCCHHHHEEEEECCCHHHHHHCCCCHHEEEHHHCCEEEEECCCCCCCEEEEECCCCCCCC
LSRPELWQAARYLVDYQGITKDLLKDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILA
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCEECCHHHHHHHH
KAGIKDATLTLDVENKPPFITIAQSLQASFAQGGVKLVLLPAAGSQVYGRVRAKQHQSAI
HCCCCCEEEEEEECCCCCEEEEHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCEE
RLWIPDYFDAHSNASTFAYNDGKSSTVAGLNGWVIPELNKQTLAAVAEADPEKRTQLYTQ
EEECCCHHCCCCCCCEEEECCCCCCEEECCCCEECCCCCHHHHHHHHHCCHHHHHHHHHH
LQQELQQNSPYIFIDQAKAQVVLRDNVKGYQQGLNADMVYYDRVSK
HHHHHHHCCCEEEEECCCEEEEEECCCHHHHCCCCCCEEEEECCCC
>Mature Secondary Structure 
GVSMKAKVLSLFVLAALSGGTLAATPPDTLIVVQSLDDIVSLDPAESNELSSIQTVPSL
CCCHHHHHHHHHHHHHHCCCEEECCCCCCEEEEECHHHHHCCCCCCCCCHHHHHHHHHH
YQRLVQADRDNPAKVVPVLAESWEGDAAAKTLTVKLRPQAVFASGNPVQADDVIYSFTRA
HHHHHHCCCCCCCEEEEHHHCCCCCCCCEEEEEEEEECEEEEECCCCCCHHHHHHHHHHH
VKMNRSPAFILNVLGWQADNIDQHLKKIDNNTVQVSWSADVSPAVALNILSTPIASIVDK
HHCCCCCCEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
KTVTANTKDDDYGNAWLKMHSAGSGAFKMRVYQPHQAIVLDANPTSPGNQPLIKNIIIKN
CEEECCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCC
VPDPSARRLLIQQGDADIARELGPDQITALKTQAGVKVVEIPSAEQNYLVFNTANAANPL
CCCHHHHEEEEECCCHHHHHHCCCCHHEEEHHHCCEEEEECCCCCCCEEEEECCCCCCCC
LSRPELWQAARYLVDYQGITKDLLKDQYFIHQSFLPVGLPGALASNPFTFDPATAKKILA
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCEECCHHHHHHHH
KAGIKDATLTLDVENKPPFITIAQSLQASFAQGGVKLVLLPAAGSQVYGRVRAKQHQSAI
HCCCCCEEEEEEECCCCCEEEEHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCEE
RLWIPDYFDAHSNASTFAYNDGKSSTVAGLNGWVIPELNKQTLAAVAEADPEKRTQLYTQ
EEECCCHHCCCCCCCEEEECCCCCCEEECCCCEECCCCCHHHHHHHHHCCHHHHHHHHHH
LQQELQQNSPYIFIDQAKAQVVLRDNVKGYQQGLNADMVYYDRVSK
HHHHHHHCCCEEEEECCCEEEEEECCCHHHHCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]