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The map label for this gene is rumC

Identifier: 51594609

GI number: 51594609

Start: 300599

End: 302104

Strand: Direct

Name: rumC

Synonym: YPTB0254

Alternate gene names: 51594609

Gene position: 300599-302104 (Clockwise)

Preceding gene: 51594608

Following gene: 51594610

Centisome position: 6.34

GC content: 46.81

Gene sequence:

>1506_bases
GTGGATATCAGTTTATTTTATGGGCTGGGTGGCTGTTTGGTCGGGGGGCTGATCGGGTGGCTAATTGCCAGTTTGTCCCA
GCAGCGAACAAAAGCACAGCAAGATATTGAACGGCGATTACTGGAGCAGGCATTACAGCAGGCACAACAGAGTATTGCTA
CATTGCAGATGACTCAACAACGTAATGAGCAACAGTTACGGCAAAGTGAGTTGGAACAACGTAATTTGCATAGCCAATTA
GCGGCAAATAGCGAAAAATTACAGCAGCTTGCTCATTGGCGTAATGAATGTGAACAGCTTAATCAAGAATTGCGGGCTCA
AAGGGAAATCAATAGTGCCCAAGAAGCAGAATTACGTGAAGTCACCATCCGCTTAGAAGAAACTCGCTTAGCCACAGAAG
AAAAGCAGCGTTTATTACTTAATAGTGAACAGCGACTGACCACTCAGTTTGAGAATTTGGCAAACCGCATCTTTGAGCAA
ACGGGGCGTCGGGCTGATGAACAGAATAAGCAAAGCTTAGATCGCCTGCTATTACCTTTACGTGAACAGCTTGATGGCTT
TCGTCGTCAGGTTCAGGATAGCTTTGGGCAAGAAGCTCGGGAGCGTCATACTCTGACTCACGAAATTCGGAACCTGCAAC
AATTGAATGCCCAGATGGCGCGAGAGGCATTGAATCTGACCAAGGCTTTGAAAGGGGATAATAAAACACAGGGTAACTGG
GGGGAAGTCGTTCTGGCCAAAGTGCTTGAAGCCTCAGGGTTACGTGAGGGGCATGAATATCAAACACAGGTTAGCGTTAA
AATTGACCAAACCAGTCGTATGCAGCCGGATGTGATTGTTCGATTACCCCAAGGCAAAGATGTCGTTATTGACGCTAAAA
TGTCATTGGTTGCCTATGAACGTTATTTTAATAGCGAAGATGATGCTGAACGTGAGGTTGCGTTGAATGAACATTTATCA
TCATTACGTGGCCATATCAGGATGCTGGGGCGTAAAGATTACCAGCAACTCCCCGGTTTACGCTCCCTCGATTATGTGTT
GATGTTTATCCCGGTAGAACCTGCATTTTTGGTGGCTATTGACCGCCAGCCTGAGTTGATCAACGAAGCACTACAACACA
ATATCATGTTGGTCAGCCCTACCACATTACTAGTGGCTTTGCGCACTATCACCAATTTGTGGCGCTACGAGCATCAAAGC
CAAAATGCGCAACGTATTGCTGAAAGAGCCGCCAGACTTTATGACAAAGTACGCTTGTTTGTTGATGATATGGCGTCTTT
GGGGCAAAGCCTCGATAAAGCACAGCTAAGCTATCACCAGGCAATGAATAAACTGTCCCAGGGCCGTGGTAACCTAGTTG
GGCAAGTAGAGAGTTTTCGCACTCTAGGGGTCGAGGTAAAGCGGCCTATTAGCCCATTACTGGCAGAAAAAGCCTGCGCG
GAGCATCAACCTGAGGGTGATTTAGCGCTATCCGATGACGCAGAATCAGGGGCATTTCCAGAGTAA

Upstream 100 bases:

>100_bases
GCGCACAGCTTCGCAAGATGAGATGTAACGCAAAAACACTCTGGACATCCATACAGTATCCTCTTACCTTGACTGACATT
AGAGGAGCAGGGGGATAATC

Downstream 100 bases:

>100_bases
TTTAATTGGCACCGCAACCAGGGGGTGTGGGGCTTTCATCGGAGTTCTGGTACACTTCCTCGAAAGATTGACTGAAAAGC
AGGCATAGAAAATGGTAGAT

Product: DNA recombination protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MDISLFYGLGGCLVGGLIGWLIASLSQQRTKAQQDIERRLLEQALQQAQQSIATLQMTQQRNEQQLRQSELEQRNLHSQL
AANSEKLQQLAHWRNECEQLNQELRAQREINSAQEAELREVTIRLEETRLATEEKQRLLLNSEQRLTTQFENLANRIFEQ
TGRRADEQNKQSLDRLLLPLREQLDGFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAREALNLTKALKGDNKTQGNW
GEVVLAKVLEASGLREGHEYQTQVSVKIDQTSRMQPDVIVRLPQGKDVVIDAKMSLVAYERYFNSEDDAEREVALNEHLS
SLRGHIRMLGRKDYQQLPGLRSLDYVLMFIPVEPAFLVAIDRQPELINEALQHNIMLVSPTTLLVALRTITNLWRYEHQS
QNAQRIAERAARLYDKVRLFVDDMASLGQSLDKAQLSYHQAMNKLSQGRGNLVGQVESFRTLGVEVKRPISPLLAEKACA
EHQPEGDLALSDDAESGAFPE

Sequences:

>Translated_501_residues
MDISLFYGLGGCLVGGLIGWLIASLSQQRTKAQQDIERRLLEQALQQAQQSIATLQMTQQRNEQQLRQSELEQRNLHSQL
AANSEKLQQLAHWRNECEQLNQELRAQREINSAQEAELREVTIRLEETRLATEEKQRLLLNSEQRLTTQFENLANRIFEQ
TGRRADEQNKQSLDRLLLPLREQLDGFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAREALNLTKALKGDNKTQGNW
GEVVLAKVLEASGLREGHEYQTQVSVKIDQTSRMQPDVIVRLPQGKDVVIDAKMSLVAYERYFNSEDDAEREVALNEHLS
SLRGHIRMLGRKDYQQLPGLRSLDYVLMFIPVEPAFLVAIDRQPELINEALQHNIMLVSPTTLLVALRTITNLWRYEHQS
QNAQRIAERAARLYDKVRLFVDDMASLGQSLDKAQLSYHQAMNKLSQGRGNLVGQVESFRTLGVEVKRPISPLLAEKACA
EHQPEGDLALSDDAESGAFPE
>Mature_501_residues
MDISLFYGLGGCLVGGLIGWLIASLSQQRTKAQQDIERRLLEQALQQAQQSIATLQMTQQRNEQQLRQSELEQRNLHSQL
AANSEKLQQLAHWRNECEQLNQELRAQREINSAQEAELREVTIRLEETRLATEEKQRLLLNSEQRLTTQFENLANRIFEQ
TGRRADEQNKQSLDRLLLPLREQLDGFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAREALNLTKALKGDNKTQGNW
GEVVLAKVLEASGLREGHEYQTQVSVKIDQTSRMQPDVIVRLPQGKDVVIDAKMSLVAYERYFNSEDDAEREVALNEHLS
SLRGHIRMLGRKDYQQLPGLRSLDYVLMFIPVEPAFLVAIDRQPELINEALQHNIMLVSPTTLLVALRTITNLWRYEHQS
QNAQRIAERAARLYDKVRLFVDDMASLGQSLDKAQLSYHQAMNKLSQGRGNLVGQVESFRTLGVEVKRPISPLLAEKACA
EHQPEGDLALSDDAESGAFPE

Specific function: Involved in DNA recombination [H]

COG id: COG1322

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rmuC family [H]

Homologues:

Organism=Escherichia coli, GI1790266, Length=481, Percent_Identity=65.9043659043659, Blast_Score=635, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003798 [H]

Pfam domain/function: PF02646 RmuC [H]

EC number: NA

Molecular weight: Translated: 57320; Mature: 57320

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDISLFYGLGGCLVGGLIGWLIASLSQQRTKAQQDIERRLLEQALQQAQQSIATLQMTQQ
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNEQQLRQSELEQRNLHSQLAANSEKLQQLAHWRNECEQLNQELRAQREINSAQEAELRE
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
VTIRLEETRLATEEKQRLLLNSEQRLTTQFENLANRIFEQTGRRADEQNKQSLDRLLLPL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
REQLDGFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAREALNLTKALKGDNKTQGNW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
GEVVLAKVLEASGLREGHEYQTQVSVKIDQTSRMQPDVIVRLPQGKDVVIDAKMSLVAYE
HHHHHHHHHHHHCCCCCCCHHEEEEEEECCCCCCCCCEEEECCCCCCEEEECHHHHHHHH
RYFNSEDDAEREVALNEHLSSLRGHIRMLGRKDYQQLPGLRSLDYVLMFIPVEPAFLVAI
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEEEECCCEEEEEE
DRQPELINEALQHNIMLVSPTTLLVALRTITNLWRYEHQSQNAQRIAERAARLYDKVRLF
CCCHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
VDDMASLGQSLDKAQLSYHQAMNKLSQGRGNLVGQVESFRTLGVEVKRPISPLLAEKACA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHHHH
EHQPEGDLALSDDAESGAFPE
CCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure
MDISLFYGLGGCLVGGLIGWLIASLSQQRTKAQQDIERRLLEQALQQAQQSIATLQMTQQ
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNEQQLRQSELEQRNLHSQLAANSEKLQQLAHWRNECEQLNQELRAQREINSAQEAELRE
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
VTIRLEETRLATEEKQRLLLNSEQRLTTQFENLANRIFEQTGRRADEQNKQSLDRLLLPL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
REQLDGFRRQVQDSFGQEARERHTLTHEIRNLQQLNAQMAREALNLTKALKGDNKTQGNW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
GEVVLAKVLEASGLREGHEYQTQVSVKIDQTSRMQPDVIVRLPQGKDVVIDAKMSLVAYE
HHHHHHHHHHHHCCCCCCCHHEEEEEEECCCCCCCCCEEEECCCCCCEEEECHHHHHHHH
RYFNSEDDAEREVALNEHLSSLRGHIRMLGRKDYQQLPGLRSLDYVLMFIPVEPAFLVAI
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCEEEEEECCCEEEEEE
DRQPELINEALQHNIMLVSPTTLLVALRTITNLWRYEHQSQNAQRIAERAARLYDKVRLF
CCCHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
VDDMASLGQSLDKAQLSYHQAMNKLSQGRGNLVGQVESFRTLGVEVKRPISPLLAEKACA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHCCHHHHHHHHHHH
EHQPEGDLALSDDAESGAFPE
CCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]