| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is fimD [H]
Identifier: 51594514
GI number: 51594514
Start: 187253
End: 189904
Strand: Reverse
Name: fimD [H]
Synonym: YPTB0158
Alternate gene names: 51594514
Gene position: 189904-187253 (Counterclockwise)
Preceding gene: 51594515
Following gene: 51594513
Centisome position: 4.0
GC content: 47.1
Gene sequence:
>2652_bases ATGGTGCAGGCACGGGTCATTCTGAAAAAAAATTTCTCAGGCCGTAGGAAAGCATTAACATTATGTATAACTTTAATTTT ACATATTGATACTGCTTTTGGGCAGGAAGAACCACAAAATTTCGAATTTGATGAATCTCTTTTTTTAGGGACAAAATATG CATCAGGTTTGACCCAGCTTAATAAAAAAAATTCTATAACTGCCGGGAATTATGATGCTGTAGATGTTTTGGTTAATAAC AAATTGTTCAAACGTATGAGCGTGCAATTTATTAAAGATGCCAACTCATCTGAGGTTTATCCCTGTCTGAGCGACGAGTT ATTAACCGCGGCTGGCGTTGAACTGGGTAGAGAAAATAGCACCCCTCCCAAAGAACCCCATGTTACCGAGGCTAATACTC CCATAACTGAAACTCACGCCCCAACGAACCAATGTTTACCTCTGTCTACGCGGGTAAAAGGGGCATCCTTTCGATTTGAT CAGGCTAAATTACGTTTAGAGCTTTCGATTCCACAGGCTCTATTACAAAAACGGCCCAGGGGCTACATTGAGCGGGCGGA ATGGCAGGAAGGCGAAAAACTCGCATTCATTAACTACAGCGCCAACGCTTATCGCAGTGATACTCGCGGCCAGCAAAAGA GAACCTCTGATTTTGGTTTTATTGGCCTTAAAAGTGGGATCAATCTGGGATTGTGGCAAGTACGCCAGCAATCGAACGTC CGCTACGCCAGTAATGATAGTGGCAGCGATACCCAGTGGAATAGCATCCGCACTTATGTGCAACGCCCGATCCCACAGTT GGATAGCCAGTTAACGTTAGGCGAAACTTTCACTGACAGTACATTATTTGGCAGCATGTCGTTCCTCGGTGCGAAAATGG CTACCGACCAACGCATGTGGCCAGTGTCAATGCGCGGTTTCTCCCCAGAGGTCCGGGGTGTCGCCAGTACCAACGCACGC GTTATTATTCGTCAGAATGGACGTGAAATTTATGAGACGAACGTCGCTCCTGGCCCGTTCGTTATTAACGATTTGTTCAG CACCAGTAGCCAAGGCGACCTTAATGTTGAGGTTATTGAGGCCAATGGTAGCCGCTCGACATTTACGGTGCCATTCAGTG CCGTTCCTGATTCAATGCGCCCAGGCGTTAGCCGCTATAATGCGGTGATCGGGGAATCACGCGATTTCACCAATATTGAT AATTATTTCACTGACTTCACCTATGAACGCGGCCTCACCAATCAACTGACGGCCAACAGTGGTGTCCGTTTAGCAAAAGA CTACACGGCATTACTTGCCGGTGGCGTATTAGGGACACCGGTCGGTGCTTTGGGCCTCAATGCCACCTATTCTCACGCCA AAGTTGAAAATGATAAAACGCAAGATGGTTGGCGGATGCAGGCCACCTATAGCCAGACCTTTAATCAAACCGGAACCACG TTCTCTTTAGCCGGGTATCGTTACTCAACGAAAGGGTATCGCGATTTAAATGATGTGTTCGGGGTGCGTTCGATGCAAAA AAACGGGGGAACGTGGGATTCATCAACCTATAAACAGCGTAGCCAATTCACCACTACTATTAATCAAGACCTCGGTAATT GGGGCCAGTTATACGCCTCTGCCTCAACCAGTGATTATTATAACGATACGGCGAGAGATACCCAGTTACAGCTAGGCTAT TCAAATAGTTATCAGCAAATCAGTTACAATTTGGCTGTCAGCCGCCAGCGCAGTGTTTATACCTCCACTCTGTATAACTG GGATAGCCCTGATACCGACGAGACGGCAACCACCACGCGCTACGGTAATACCGAGAACATCGCAACATTCACCGTTTCTA TTCCACTGAATATTGGTAGCAACAACCAATATCTATCAATGTCAGCTAGCCGTAATCCGAAAAGCGGTAATAACTATCAA ACATCATTATCAGGCACCGCCGGTGAGCGAAATTCCTTCAACTATGCATTAAATGCAGGCTATGACGACAGCAACATCGG TAGTAGCTCAAATAATTGGGGGGCCAACGTACAGAAGCAATTCCCCAATGCTACCGTTAATGGCAGCTATTCTCGTGGCA ATAATTACACCCAATATGGCGCAGGCGCTCGTGGTGCGGCGGTAATACATCGACAAGGCGTGACTCTGGGCCCTTATCTG GGTGAGACCTTTGGTTTAATTGAAGCTAATGGTGCTCAAGGGGCGACAGTTCGTAATGCCCAAGGGGCAAGAATTGATAG TAACGGTTTTGCTCTGGTGCCCGCGCTAACGCCTTATAACTACAACACAATAGGGCTGGATACCAAGGGGATTAACCGTA ACACCGAGTTGAAAGAGAATCAGGGCCGTGTCGTCCCTTATGCCGGGGCAGCGGTAAAAGTGAAATTTGAAACACTGACT GGCTATGCGGTGTTAATTCAAGCCGAAGGTGAGAGGTTACCATTGGGTGCCGATGTGTATAACAGCAAAGATGAACTGGT TGGAATGGTAGGTCAGGGGAATCAGATCTACGCACGGATAGCCGATAACAAAGGTACACTTGATGTCCGTTGGGGCGAAA GCAGCGGTGATCAGTGTCAATTACCTTATGCTTTTAATCGCCAGGATACCGAGCAAGATATCATTCATATAACCGCGAGT TGCCGCCGCTAA
Upstream 100 bases:
>100_bases CTCGTCAGCAACGATTAACTTTCTGATCATGAATGATTTCGGCGGGCAAGATGCCGGTAGCTATCGTATTTAGCAGTAAC TTTCCGGTAAAGGAATATTT
Downstream 100 bases:
>100_bases CCCTATGAGAAAAATAATGTTAAGACCAACAAAGCCATTAATATCTTCCGGCATTTCGCAGTCTACCACTGCGGTCTATT GCCGCCGCCCATATTTTCTT
Product: outer membrane fimbrial usher porin
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 883; Mature: 883
Protein sequence:
>883_residues MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQLNKKNSITAGNYDAVDVLVNN KLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENSTPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFD QAKLRLELSIPQALLQKRPRGYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMWPVSMRGFSPEVRGVASTNAR VIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIEANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNID NYFTDFTYERGLTNQLTANSGVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYASASTSDYYNDTARDTQLQLGY SNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTRYGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQ TSLSGTAGERNSFNYALNAGYDDSNIGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL GETFGLIEANGAQGATVRNAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKENQGRVVPYAGAAVKVKFETLT GYAVLIQAEGERLPLGADVYNSKDELVGMVGQGNQIYARIADNKGTLDVRWGESSGDQCQLPYAFNRQDTEQDIIHITAS CRR
Sequences:
>Translated_883_residues MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQLNKKNSITAGNYDAVDVLVNN KLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENSTPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFD QAKLRLELSIPQALLQKRPRGYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMWPVSMRGFSPEVRGVASTNAR VIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIEANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNID NYFTDFTYERGLTNQLTANSGVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYASASTSDYYNDTARDTQLQLGY SNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTRYGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQ TSLSGTAGERNSFNYALNAGYDDSNIGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL GETFGLIEANGAQGATVRNAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKENQGRVVPYAGAAVKVKFETLT GYAVLIQAEGERLPLGADVYNSKDELVGMVGQGNQIYARIADNKGTLDVRWGESSGDQCQLPYAFNRQDTEQDIIHITAS CRR >Mature_883_residues MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQLNKKNSITAGNYDAVDVLVNN KLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENSTPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFD QAKLRLELSIPQALLQKRPRGYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMWPVSMRGFSPEVRGVASTNAR VIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIEANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNID NYFTDFTYERGLTNQLTANSGVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYASASTSDYYNDTARDTQLQLGY SNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTRYGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQ TSLSGTAGERNSFNYALNAGYDDSNIGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL GETFGLIEANGAQGATVRNAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKENQGRVVPYAGAAVKVKFETLT GYAVLIQAEGERLPLGADVYNSKDELVGMVGQGNQIYARIADNKGTLDVRWGESSGDQCQLPYAFNRQDTEQDIIHITAS CRR
Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1790772, Length=858, Percent_Identity=30.4195804195804, Blast_Score=374, Evalue=1e-104, Organism=Escherichia coli, GI1787172, Length=893, Percent_Identity=30.2351623740202, Blast_Score=372, Evalue=1e-104, Organism=Escherichia coli, GI1786332, Length=871, Percent_Identity=30.9988518943743, Blast_Score=369, Evalue=1e-103, Organism=Escherichia coli, GI1786744, Length=907, Percent_Identity=30.5402425578831, Blast_Score=366, Evalue=1e-102, Organism=Escherichia coli, GI1789533, Length=880, Percent_Identity=30.7954545454545, Blast_Score=361, Evalue=1e-100, Organism=Escherichia coli, GI1788427, Length=865, Percent_Identity=30.1734104046243, Blast_Score=357, Evalue=1e-99, Organism=Escherichia coli, GI87081778, Length=863, Percent_Identity=25.4924681344148, Blast_Score=223, Evalue=5e-59, Organism=Escherichia coli, GI1789610, Length=801, Percent_Identity=22.8464419475655, Blast_Score=117, Evalue=4e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 97250; Mature: 97250
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQL CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHH NKKNSITAGNYDAVDVLVNNKLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENS CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC TPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFDQAKLRLELSIPQALLQKRPR CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEECCEEEEEEEECCHHHHHCCCC GYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV CCHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCEEEHHHCCC RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMW EEECCCCCCCCCHHHHHHHHHCCCHHHCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCC PVSMRGFSPEVRGVASTNARVIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIE EEECCCCCCCCCEEECCCCEEEEEECCCEEEECCCCCCCEEEEHHHCCCCCCCEEEEEEE ANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNIDNYFTDFTYERGLTNQLTANS CCCCCEEEEEEHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCEEECCCCCCCCCCCC GVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT CCEEHHHHHHHHHCCHHCCCCHHHCCCCCCCCEECCCCCCCCCEEEEEEHHHHHCCCCCE FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYAS EEEECEEECCCCCCCHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHEEEE ASTSDYYNDTARDTQLQLGYSNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTR CCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEE YGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQTSLSGTAGERNSFNYALNAG CCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEECC YDDSNIGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL CCCCCCCCCCCCCCCCHHHHCCCCEECCCCCCCCCCEECCCCCCCEEEEEECCCEECCCC GETFGLIEANGAQGATVRNAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKEN CCCCCEEECCCCCCCEEECCCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCC QGRVVPYAGAAVKVKFETLTGYAVLIQAEGERLPLGADVYNSKDELVGMVGQGNQIYARI CCCEEEECCCEEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEEE ADNKGTLDVRWGESSGDQCQLPYAFNRQDTEQDIIHITASCRR ECCCCEEEEEECCCCCCEEECCEECCCCCCCCEEEEEEEECCC >Mature Secondary Structure MVQARVILKKNFSGRRKALTLCITLILHIDTAFGQEEPQNFEFDESLFLGTKYASGLTQL CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHH NKKNSITAGNYDAVDVLVNNKLFKRMSVQFIKDANSSEVYPCLSDELLTAAGVELGRENS CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCC TPPKEPHVTEANTPITETHAPTNQCLPLSTRVKGASFRFDQAKLRLELSIPQALLQKRPR CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEECCEEEEEEEECCHHHHHCCCC GYIERAEWQEGEKLAFINYSANAYRSDTRGQQKRTSDFGFIGLKSGINLGLWQVRQQSNV CCHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCEEEHHHCCC RYASNDSGSDTQWNSIRTYVQRPIPQLDSQLTLGETFTDSTLFGSMSFLGAKMATDQRMW EEECCCCCCCCCHHHHHHHHHCCCHHHCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCC PVSMRGFSPEVRGVASTNARVIIRQNGREIYETNVAPGPFVINDLFSTSSQGDLNVEVIE EEECCCCCCCCCEEECCCCEEEEEECCCEEEECCCCCCCEEEEHHHCCCCCCCEEEEEEE ANGSRSTFTVPFSAVPDSMRPGVSRYNAVIGESRDFTNIDNYFTDFTYERGLTNQLTANS CCCCCEEEEEEHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCEEECCCCCCCCCCCC GVRLAKDYTALLAGGVLGTPVGALGLNATYSHAKVENDKTQDGWRMQATYSQTFNQTGTT CCEEHHHHHHHHHCCHHCCCCHHHCCCCCCCCEECCCCCCCCCEEEEEEHHHHHCCCCCE FSLAGYRYSTKGYRDLNDVFGVRSMQKNGGTWDSSTYKQRSQFTTTINQDLGNWGQLYAS EEEECEEECCCCCCCHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHEEEE ASTSDYYNDTARDTQLQLGYSNSYQQISYNLAVSRQRSVYTSTLYNWDSPDTDETATTTR CCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEE YGNTENIATFTVSIPLNIGSNNQYLSMSASRNPKSGNNYQTSLSGTAGERNSFNYALNAG CCCCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEECC YDDSNIGSSSNNWGANVQKQFPNATVNGSYSRGNNYTQYGAGARGAAVIHRQGVTLGPYL CCCCCCCCCCCCCCCCHHHHCCCCEECCCCCCCCCCEECCCCCCCEEEEEECCCEECCCC GETFGLIEANGAQGATVRNAQGARIDSNGFALVPALTPYNYNTIGLDTKGINRNTELKEN CCCCCEEECCCCCCCEEECCCCCEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCC QGRVVPYAGAAVKVKFETLTGYAVLIQAEGERLPLGADVYNSKDELVGMVGQGNQIYARI CCCEEEECCCEEEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCEEEEEE ADNKGTLDVRWGESSGDQCQLPYAFNRQDTEQDIIHITASCRR ECCCCEEEEEECCCCCCEEECCEECCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677609 [H]