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The map label for this gene is quuD [H]

Identifier: 51594510

GI number: 51594510

Start: 183509

End: 183880

Strand: Direct

Name: quuD [H]

Synonym: YPTB0154

Alternate gene names: 51594510

Gene position: 183509-183880 (Clockwise)

Preceding gene: 51594509

Following gene: 51594511

Centisome position: 3.87

GC content: 38.17

Gene sequence:

>372_bases
ATGAGTTATATTCAAACCGTACTGGCACGCTGGGGTGTTTGGGCCAGAGATAACAGTTGCCTCGATTATCCGCATATTTC
TAGTGGTTTTAAAGGATTAGTCACAAGAAACAAACCCGCTGAGTCCTGTTGCGATCATGACGGATTGGTCATTGATAATA
CGGTAGGTAATTTACAGCGCGCAGCAAGAGAAAAAGAATTGGAACTTATTCTTCGTCATTATGTTTATGGACAATCTAAA
TCTTCTATTGCTCGATTAAAAAAATGCAATGAGCGTGAAATAAGACGCCAGTTACAAATTGCAGAAAGTTTTATTGAAGG
ATGCATCACGCAATCTGATATTTTACTGGAGATGCATAAAGAGTTATTTTGA

Upstream 100 bases:

>100_bases
TTATTTTTAAGGTCAGCAACACTAAGTGACTGGGGTGAGCAAGGGCGGCTAACGTCCCTGCATCTTGCAGGGTGACGGGT
ATATAACAAGGAGAGAAACT

Downstream 100 bases:

>100_bases
TAATAAACCAATGTTTTTAGGTATGAGAAGTTAAATGTAATTATGACTCAAAAATATTGATAGAGATGTAGATTAAATAA
GGATATAACGCATAGAAAAT

Product: phage antitermination protein Q

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MSYIQTVLARWGVWARDNSCLDYPHISSGFKGLVTRNKPAESCCDHDGLVIDNTVGNLQRAAREKELELILRHYVYGQSK
SSIARLKKCNEREIRRQLQIAESFIEGCITQSDILLEMHKELF

Sequences:

>Translated_123_residues
MSYIQTVLARWGVWARDNSCLDYPHISSGFKGLVTRNKPAESCCDHDGLVIDNTVGNLQRAAREKELELILRHYVYGQSK
SSIARLKKCNEREIRRQLQIAESFIEGCITQSDILLEMHKELF
>Mature_122_residues
SYIQTVLARWGVWARDNSCLDYPHISSGFKGLVTRNKPAESCCDHDGLVIDNTVGNLQRAAREKELELILRHYVYGQSKS
SIARLKKCNEREIRRQLQIAESFIEGCITQSDILLEMHKELF

Specific function: Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage antitermination Q type 1 family [H]

Homologues:

Organism=Escherichia coli, GI1786763, Length=120, Percent_Identity=37.5, Blast_Score=76, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010534 [H]

Pfam domain/function: PF06530 Phage_antitermQ [H]

EC number: NA

Molecular weight: Translated: 14155; Mature: 14024

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYIQTVLARWGVWARDNSCLDYPHISSGFKGLVTRNKPAESCCDHDGLVIDNTVGNLQR
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECHHHHHHH
AAREKELELILRHYVYGQSKSSIARLKKCNEREIRRQLQIAESFIEGCITQSDILLEMHK
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ELF
HHC
>Mature Secondary Structure 
SYIQTVLARWGVWARDNSCLDYPHISSGFKGLVTRNKPAESCCDHDGLVIDNTVGNLQR
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEECHHHHHHH
AAREKELELILRHYVYGQSKSSIARLKKCNEREIRRQLQIAESFIEGCITQSDILLEMHK
HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ELF
HHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8648624; 9278503 [H]