| Definition | Yersinia pseudotuberculosis IP 32953, complete genome. |
|---|---|
| Accession | NC_006155 |
| Length | 4,744,671 |
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The map label for this gene is hmuR [H]
Identifier: 51594471
GI number: 51594471
Start: 132243
End: 134735
Strand: Direct
Name: hmuR [H]
Synonym: YPTB0113
Alternate gene names: 51594471
Gene position: 132243-134735 (Clockwise)
Preceding gene: 51594470
Following gene: 51594472
Centisome position: 2.79
GC content: 44.4
Gene sequence:
>2493_bases ATGGATAATATAATTAGAGATAAAAAAACAATAATTTCAGTGAATAAAATTACAACTTGTATATTATTCGCATTGGTAAC GCAAAGCTATTCAGGGCAGCTAGCGGCAAATACAGCCACAATCCCCACTAATAATAACGATATGGCGTTGGATAAATTAA ACGTCGAAGGTAAAGGGAATGCCCATGATAGCGATTGGATATATGACGAACCCCGCTCGGTCAGTGAAATTACGCGGGAA CAACTTGATAACCGGCCCGCTCGCCACGCTGCAGATATTTTAGAACAAACTCCCGGTGTCTATTCCAGCGTTAGCCAACA AGACCCTGGGCTTTCAATAAATATTCGCGGCATACAAGATTATGGCCGTGTAAATATGAATATTGACGGTATGCGTCAGA ACTTTATGAAAAGCGGTCATGGTCAGCGCAATGGGTCGATGTATATTGACCCAGAAATTTTAAGCAATGTGGTGATTGAA CGGGGCATTTTCAACGGTATTGGTGGGGCGGGAGCCATTGGCGGTATCGCCACCTTTAATACCATCAATGCCAGTGATTT TTTGGCCCCAGAGAAAGAGCTGGGCGGGCATATCCGGGCAATGACCGGGGATAACGGCACCCGCTTTATTGGCAGCGGTG CGTTGGCGCTGGGCAACCCAAATGGCGATATATTACTTGCTGTTAGTGAACGTAACCTGAAGGATTATTGGCCGGGGAAT AAAGGCGTTTTGGCCGGGTTGCGTCTCTATAGCCCTACCAGAAACGTCGGCGATGACTTAAAGAATACCAAGACATTGTT TACAGGCTATAAAATGCGTTCGCAGCTCGCTAAAGTCGGTTGGAATTTTGAGGCCGGCCAGCGTTTGGAGTTCAGCTATT TACAAACACAAATCGCCAGCCCCAATGCCAGTATGCTGTCAGAAGTTCTGGCATTGTCGCCATCAGGGAAAGAGATAACA AAGATTGGCTGGAGGAACACAAGTTTTACTAACGTGGAAAACCGTAATATTGCGTTAGATTACCGCCTGAATCCTGAGCA TATTAGTTGGCTGGATGCAACGGCAAAGATCTATTACGTTGATACCAATGATGAAACTGATAATGCTAATTCCCTTTTCA AGGAATATTTCTGGACTCAAACACGCCTGAAAACCCGTGGCTTACAATTGCAAAACACCAATACCTTTACCCCATCGGAT GCGCATCAAATACGGTTGAAATATGGTTTGGAATGGTTTAGCGATAAATCTGAGGGGTACTCAACACGCAAACTTATTGA AAGAACGACCCCCCCCGGCAAGCGCGCTATCACCAGTACCTTTGCTCAACTTAACTACGAATATGATGATTGGCTGCGGT TGGAAGGAGGGCTGCGTTATGATCAATTCCGTTTGAAAGGCAATACCTGGCTCCATACCCGCTCTTTCCTGCAGCCCTAT ACTTTTGAGAACCCCTGTGACCGAAGGATACATGAGCAGTCTGAAAAGCCTGGATCGCGGTGTTCATCTAGGAGACCCGC AACAATGAGGTGGGATGTTGACCGCCGTGAACAGCAACTCTCGCCAACGTTGGCGATGGGGGTCAAGCCTGGCCTCGAAT GGCTGGAGTTTTTTGGCAGCTACGGTAAATCCTGGCGGCCACCGGCAATGACAGAAGTGTTAGCAACCGGCACCGCCCAT GGTTACAGTTGGGTCTTACCTAATCCTTTCGTGGCCGCCGAACGTGCCAGAACGTGGGAGGCGGGGTTTAATATTCAGCA GTCCAATTTATTTATCGAAGACGATCACTTTGCCGCGAAGGTCGCTTATTTTGATACCCGTATTGCCAACTATATTAACC TTGAATTAGGTAAGGCCAAACCCAAGTTTGGGGGGGATTCTTTTACTGATGTAGCTTATGTCAATAATTTACTCAAAACC CGTTTCCGTGGCTTAGAATATCAATTAAGTTATGATGCTGGCACATTTTATACCAATATTAATTACACCAGAATGATTGG TGTAAATAATGTTTGTTCACCATATGCTTGGTTAGGCGGCTTACAGTCAGTAAAATATAAGTACGTTGGAAAGGTAGAGC AAATTTATGCCGTTGAAAATGAGGTGGCCAATAATTATGTAACCTGTATGAATGCCAATGTGTTATTTGGCTCATCGGCT TATTTACCGGGTGATCGCGGTAGTTTAACTTTGGGGAGTAGAATATTTGATAGAAGGCTAGATTTTGGTACTGTTATCCG TTATAACAAAGGGTATCAGGATCGTTCAGCGCAAGATGAAAATGGTAATCCACTGACGGCTTATGTTGCCGATTGGCCGA AGTATATCGTATATGATCTTTATGCCAGTTATAAGGTAACGAATAATTTAATATTGCGTAGTTCAATAGAAAATATAACT AACCGTGCATATTTAGTTAATTATGGCGATACGCTTTCATTTGCCCCTAGCCGCGGCAGGACTATTCAGGGTGGTTTTGA ATATAAATTCTAA
Upstream 100 bases:
>100_bases TATCGGCATTAGTGATATCTACCGACCATGATGAATGCATTACTTTGTTGATAATTGATGTTCATATTATTTTTATATTG TTAAGGATGAAGTTTCATAA
Downstream 100 bases:
>100_bases ATTATAAAGTCTTTAGGTGAGTATACTCTAAATAATTCGAGTTGCAGAAAGGCAGCAAGTGAATAAATCCCGCATCATTG ACGGCAGTCAATGATGCGGG
Product: TonB dependent receptor protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 830; Mature: 830
Protein sequence:
>830_residues MDNIIRDKKTIISVNKITTCILFALVTQSYSGQLAANTATIPTNNNDMALDKLNVEGKGNAHDSDWIYDEPRSVSEITRE QLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIE RGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGN KGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEIT KIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSD AHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPY TFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRREQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAH GYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKT RFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSA YLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIENIT NRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
Sequences:
>Translated_830_residues MDNIIRDKKTIISVNKITTCILFALVTQSYSGQLAANTATIPTNNNDMALDKLNVEGKGNAHDSDWIYDEPRSVSEITRE QLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIE RGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGN KGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEIT KIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSD AHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPY TFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRREQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAH GYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKT RFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSA YLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIENIT NRAYLVNYGDTLSFAPSRGRTIQGGFEYKF >Mature_830_residues MDNIIRDKKTIISVNKITTCILFALVTQSYSGQLAANTATIPTNNNDMALDKLNVEGKGNAHDSDWIYDEPRSVSEITRE QLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIE RGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGN KGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEIT KIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSD AHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPY TFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRREQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAH GYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKT RFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSA YLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIENIT NRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
Specific function: This protein is involved in the initial step of iron uptake by binding hemin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR011276 - InterPro: IPR010949 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 93574; Mature: 93574
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNIIRDKKTIISVNKITTCILFALVTQSYSGQLAANTATIPTNNNDMALDKLNVEGKGN CCCCCCCCHHEEEHHHHHHHHHHHHHHHCCCCCEEECEEECCCCCCCEEEEEEECCCCCC AHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQD CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCCCCCCCEEEEEEECC YGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFN CCEEECEEHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE TINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGN ECCHHHCCCCHHHHCCEEEEEECCCCCEEEECCEEEEECCCCCEEEEEECCCCHHHCCCC KGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIAS CCEEEEEEEECCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCC PNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYV CCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECHHHHEEEECCEEEEEE DTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGY ECCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEECCHHHCCCCCCC STRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPY HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCEEEEEHHHCCCC TFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRREQQLSPTLAMGVKPGLEWLEFFGS CCCCCHHHHHHHHCCCCCHHHCCCCCCEEEECCHHHHHHCCCHHEECCCCCHHHHHHHHH YGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAK CCCCCCCCHHHHHHHCCCCCCEEEECCCCCHHHHHCCCHHCCCCEECCCEEEECCCCEEE VAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNI EEHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEECC NYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSA CEEEEECCCCCCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECEEEECCCC YLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDL CCCCCCCCEEHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH YASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF HHHEEHHCCEEEHHHHHHHCCCEEEEECCCEEEECCCCCCEEECCCCCCC >Mature Secondary Structure MDNIIRDKKTIISVNKITTCILFALVTQSYSGQLAANTATIPTNNNDMALDKLNVEGKGN CCCCCCCCHHEEEHHHHHHHHHHHHHHHCCCCCEEECEEECCCCCCCEEEEEEECCCCCC AHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQD CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCCCCCCCEEEEEEECC YGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFN CCEEECEEHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE TINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGN ECCHHHCCCCHHHHCCEEEEEECCCCCEEEECCEEEEECCCCCEEEEEECCCCHHHCCCC KGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIAS CCEEEEEEEECCCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHCC PNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYV CCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEECHHHHEEEECCEEEEEE DTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGY ECCCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEECCHHHCCCCCCC STRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPY HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCEEEEEHHHCCCC TFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRREQQLSPTLAMGVKPGLEWLEFFGS CCCCCHHHHHHHHCCCCCHHHCCCCCCEEEECCHHHHHHCCCHHEECCCCCHHHHHHHHH YGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAK CCCCCCCCHHHHHHHCCCCCCEEEECCCCCHHHHHCCCHHCCCCEECCCEEEECCCCEEE VAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNI EEHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEECC NYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSA CEEEEECCCCCCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECEEEECCCC YLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDL CCCCCCCCEEHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHH YASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF HHHEEHHCCEEEHHHHHHHCCCEEEEECCCEEEECCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9026634; 11586360; 12142430 [H]