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The map label for this gene is rlpA [C]

Identifier: 50843708

GI number: 50843708

Start: 2461136

End: 2462632

Strand: Direct

Name: rlpA [C]

Synonym: PPA2271

Alternate gene names: 50843708

Gene position: 2461136-2462632 (Clockwise)

Preceding gene: 50843707

Following gene: 50843709

Centisome position: 96.13

GC content: 65.53

Gene sequence:

>1497_bases
ATGCCTTTAATGGCGAGAGGAAGTCACACCGTGATCCGCCCCAAGCGCTCAGTCCGAGGTGCTGCCGCCACCATCGCCCT
CACCTCCGGTATCAGCGTTGTTGCGCCGGCCGTCATTGGCTCGGTCGCACACGCAGCAAATACGCAGACGATGTACACGA
CCGCGGACGTCAACGTGCGGTCTGCCTCCTCCAACTCCGGCAGGGTGCTCACTGTCGCGGCACGCGGCCAGTCGGTGAAG
GTCACCGGCGAGAAGGTGCGCGGGTGGGTCCCCGTTGCCGTCAATGGCACCAGCGGCTGGATCTACCAGCGCTACCTCAC
CGAGGAGAACGTCCACCCGGTGCACTTCGGCTCCGATCCTCTTCCCGACACCATGATCGCCGCTGTCCCGGTTAACGTTC
GTAGCGACTCTGCTAATGCTGGCAAAGTCCTCACCGTTGCCGAGCGTGGTCAGCAGGTGCAGATCACCGGGCGTCCTGAC
GGCGGTTGGGTCCCGGTCTCCGTCAACGGCAAGTCCGGATGGATTTACGGCCGCTACCTCACCACGGGGAAGGCAGCTGC
GGCCCCCGCCAAGCCAAAGACTGACGCTAAGAACGACTCTTCGACGAGCCGCGACCAGGGTCGTCCAGCCCTTGGCAACG
CCGCCACCCGCACCACCAGCGGGCTCAACATGCGCACCGCCCCTTCGCCGTCCGGGCAGGTCATCAACCAGCTTGCCAGC
GGTGCAGGAGTCCAAGTTACCGGCGAAGTCCACGGCAACTGGGTCCAAATCCGCGCCAACGGCTACACCGGCTGGGCATA
CCGCACCCACCTCACCGGCAACGTCCCAGCCGCCCAGCCCATCAAACACGCCGAACCCACAAAACCCAGCACCCCAGCCA
AACCACGAACTCCAGCCAAGGACGACGCCCCCATCCACACCACCAGCGACGTCAACGTGCGCACCGCTCCCAGCCCCACA
GCCAAGGCCATCACCGCCCTCGCGCAGGGAACCGGAGCCCGCCCCACCGGCGAAGTCCACGGCAACTGGGTCCAAATCCG
CGCCAACGGCTACACCGGCTGGGCATACCGCACCCACCTCACCGGCAACGTCCCAGCCACTAAGGTGGACACTCCCTCTC
GTAACACGCACAGGGGGAGCGATACCAGCCGCGACAAAGCCCGTCCGCCGCGTCAGGATTCGAGCAACGACGATTCGGTC
AAGGGTTCCGGTCGCATCGCCGGCCGCTGCATTGCCTCGTTTTACGACGAGCCGCAGACGACCGCCTCGGGCGAGCAGTT
CAACCCGAACGCCATGACCGCGGCCAACAAGACTCTGCCGCTGGGCACCCGCATCCGCGTCACCAACGTCCGTAATGGCC
GTTCGACCGTCGTCCGGATCAATGACCGTGGCCCGTACGTCGCCGGGCGTTGCGTCGACCTGTCGCGTGCTTCGTTCGCC
AGGATTGCGGATATCGGTCAGGGCACAGCCCCGATCACCTACACCATCCTCGGCTGA

Upstream 100 bases:

>100_bases
CGGTTGACGCGACACGCTCAAACCCTCAACGTCCTTGGGGCGACCGGTGGTGAATTCCTAATGTCCCACCCGTCCCGGAA
ACGCCGGGATCGAAGCCCCG

Downstream 100 bases:

>100_bases
GCTCAACGCCTCGTAGGGGCGGTTCGCTATTAAGCGGGCCGCCCCTACGCACATCTACCGGGTCTACGTTGGTCGCTCCA
ACCCAGTGACGAAAACTGTC

Product: lipoprotein A family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 498; Mature: 497

Protein sequence:

>498_residues
MPLMARGSHTVIRPKRSVRGAAATIALTSGISVVAPAVIGSVAHAANTQTMYTTADVNVRSASSNSGRVLTVAARGQSVK
VTGEKVRGWVPVAVNGTSGWIYQRYLTEENVHPVHFGSDPLPDTMIAAVPVNVRSDSANAGKVLTVAERGQQVQITGRPD
GGWVPVSVNGKSGWIYGRYLTTGKAAAAPAKPKTDAKNDSSTSRDQGRPALGNAATRTTSGLNMRTAPSPSGQVINQLAS
GAGVQVTGEVHGNWVQIRANGYTGWAYRTHLTGNVPAAQPIKHAEPTKPSTPAKPRTPAKDDAPIHTTSDVNVRTAPSPT
AKAITALAQGTGARPTGEVHGNWVQIRANGYTGWAYRTHLTGNVPATKVDTPSRNTHRGSDTSRDKARPPRQDSSNDDSV
KGSGRIAGRCIASFYDEPQTTASGEQFNPNAMTAANKTLPLGTRIRVTNVRNGRSTVVRINDRGPYVAGRCVDLSRASFA
RIADIGQGTAPITYTILG

Sequences:

>Translated_498_residues
MPLMARGSHTVIRPKRSVRGAAATIALTSGISVVAPAVIGSVAHAANTQTMYTTADVNVRSASSNSGRVLTVAARGQSVK
VTGEKVRGWVPVAVNGTSGWIYQRYLTEENVHPVHFGSDPLPDTMIAAVPVNVRSDSANAGKVLTVAERGQQVQITGRPD
GGWVPVSVNGKSGWIYGRYLTTGKAAAAPAKPKTDAKNDSSTSRDQGRPALGNAATRTTSGLNMRTAPSPSGQVINQLAS
GAGVQVTGEVHGNWVQIRANGYTGWAYRTHLTGNVPAAQPIKHAEPTKPSTPAKPRTPAKDDAPIHTTSDVNVRTAPSPT
AKAITALAQGTGARPTGEVHGNWVQIRANGYTGWAYRTHLTGNVPATKVDTPSRNTHRGSDTSRDKARPPRQDSSNDDSV
KGSGRIAGRCIASFYDEPQTTASGEQFNPNAMTAANKTLPLGTRIRVTNVRNGRSTVVRINDRGPYVAGRCVDLSRASFA
RIADIGQGTAPITYTILG
>Mature_497_residues
PLMARGSHTVIRPKRSVRGAAATIALTSGISVVAPAVIGSVAHAANTQTMYTTADVNVRSASSNSGRVLTVAARGQSVKV
TGEKVRGWVPVAVNGTSGWIYQRYLTEENVHPVHFGSDPLPDTMIAAVPVNVRSDSANAGKVLTVAERGQQVQITGRPDG
GWVPVSVNGKSGWIYGRYLTTGKAAAAPAKPKTDAKNDSSTSRDQGRPALGNAATRTTSGLNMRTAPSPSGQVINQLASG
AGVQVTGEVHGNWVQIRANGYTGWAYRTHLTGNVPAAQPIKHAEPTKPSTPAKPRTPAKDDAPIHTTSDVNVRTAPSPTA
KAITALAQGTGARPTGEVHGNWVQIRANGYTGWAYRTHLTGNVPATKVDTPSRNTHRGSDTSRDKARPPRQDSSNDDSVK
GSGRIAGRCIASFYDEPQTTASGEQFNPNAMTAANKTLPLGTRIRVTNVRNGRSTVVRINDRGPYVAGRCVDLSRASFAR
IADIGQGTAPITYTILG

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=95, Percent_Identity=45.2631578947368, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 52306; Mature: 52175

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLMARGSHTVIRPKRSVRGAAATIALTSGISVVAPAVIGSVAHAANTQTMYTTADVNVR
CCCEECCCCEEECCCHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECEEEE
SASSNSGRVLTVAARGQSVKVTGEKVRGWVPVAVNGTSGWIYQRYLTEENVHPVHFGSDP
ECCCCCCCEEEEEECCCEEEEEHHHHCCEEEEEEECCCCEEEEEEECCCCCCEEECCCCC
LPDTMIAAVPVNVRSDSANAGKVLTVAERGQQVQITGRPDGGWVPVSVNGKSGWIYGRYL
CCCCEEEEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEE
TTGKAAAAPAKPKTDAKNDSSTSRDQGRPALGNAATRTTSGLNMRTAPSPSGQVINQLAS
ECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHC
GAGVQVTGEVHGNWVQIRANGYTGWAYRTHLTGNVPAAQPIKHAEPTKPSTPAKPRTPAK
CCCEEEEEEECCCEEEEEECCEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DDAPIHTTSDVNVRTAPSPTAKAITALAQGTGARPTGEVHGNWVQIRANGYTGWAYRTHL
CCCCEEECCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEECEEEEEEE
TGNVPATKVDTPSRNTHRGSDTSRDKARPPRQDSSNDDSVKGSGRIAGRCIASFYDEPQT
ECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
TASGEQFNPNAMTAANKTLPLGTRIRVTNVRNGRSTVVRINDRGPYVAGRCVDLSRASFA
CCCCCCCCCCCEECCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEEECCHHHHH
RIADIGQGTAPITYTILG
HHHHCCCCCCCEEEEEEC
>Mature Secondary Structure 
PLMARGSHTVIRPKRSVRGAAATIALTSGISVVAPAVIGSVAHAANTQTMYTTADVNVR
CCEECCCCEEECCCHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECEEEE
SASSNSGRVLTVAARGQSVKVTGEKVRGWVPVAVNGTSGWIYQRYLTEENVHPVHFGSDP
ECCCCCCCEEEEEECCCEEEEEHHHHCCEEEEEEECCCCEEEEEEECCCCCCEEECCCCC
LPDTMIAAVPVNVRSDSANAGKVLTVAERGQQVQITGRPDGGWVPVSVNGKSGWIYGRYL
CCCCEEEEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEEE
TTGKAAAAPAKPKTDAKNDSSTSRDQGRPALGNAATRTTSGLNMRTAPSPSGQVINQLAS
ECCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHC
GAGVQVTGEVHGNWVQIRANGYTGWAYRTHLTGNVPAAQPIKHAEPTKPSTPAKPRTPAK
CCCEEEEEEECCCEEEEEECCEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DDAPIHTTSDVNVRTAPSPTAKAITALAQGTGARPTGEVHGNWVQIRANGYTGWAYRTHL
CCCCEEECCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEECEEEEEEE
TGNVPATKVDTPSRNTHRGSDTSRDKARPPRQDSSNDDSVKGSGRIAGRCIASFYDEPQT
ECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
TASGEQFNPNAMTAANKTLPLGTRIRVTNVRNGRSTVVRINDRGPYVAGRCVDLSRASFA
CCCCCCCCCCCEECCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEEEECCHHHHH
RIADIGQGTAPITYTILG
HHHHCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]