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The map label for this gene is rlpA [C]

Identifier: 50843612

GI number: 50843612

Start: 2357193

End: 2358224

Strand: Direct

Name: rlpA [C]

Synonym: PPA2175

Alternate gene names: 50843612

Gene position: 2357193-2358224 (Clockwise)

Preceding gene: 50843608

Following gene: 50843614

Centisome position: 92.07

GC content: 63.08

Gene sequence:

>1032_bases
ATGACCAACACCTCGACCAACGCCGGGACGACTCTCAAGCGCACCGTCGCTCTGGCCGCTGCGGCGAGTCTCGCCGTCAT
GGGCACCATCGCCGAGGAGGCTCACGCCGCCCCTGCCGGCAACCTTGGGGCTCATGCCGAGAAGGCTCCCACCCAGCACA
CCAAGAAGGCACCGGCTGAACAGGCCAAACGCGCCACGACGTACACCGCTCGGTTCGCGCTTACTCGCGTCCACCTCAAC
GTCCGTTCTGGACACAGCACTGAGTATCGACGCTACGGGCTCCTCCGTCCCGGCGACAAGCTCCTTATTATCGGCGAGGA
TGTCCGGGGCTGGACTCCTGTCAACTACCGCGGCAAGACTGCCTGGGTGGCCACCCGTTACATCACTAAGATGAACCGTC
CGGTCGGTATCTACGCCCAGCGTGGCGATCACAATGCCCGCTCGAAGGCTGTCCAGCGCGACCTATCGACCCTCAACTAC
TTCCCGGCCAAGTGGGTCGGCTTGCCCTATGGCCCGATCACTACCAACGCCGTCAAGGTGTTCCAGAGGGCCAACGCTCT
CAAGCAGACTGGCGTGACCGACGCCGTCACCCTGGGACTGCTCAAATCGAAGGCCGACTACCAGCGAGCCGCAGCGGCCG
AGAAGAGCTCCACGTACAAGCACGCGGAGCATCACTCCGAGCACTCCTCGAGCACCTCCCGCTCGACTGCCCGTCCAGCG
CGCAACACGTCCCCCGACGTTTCCACGAGTGGTATAGCTGGAAGCTGCCAGGCTTCCTTCTACGACGATTCCCAGACCGC
CTCCGGTGAATCCTTCAGCTCGTCAGCCCTGACGGCTGCCTCCAAGACCTACTCTTTCGGCACTCGCCTCAAGGTCACTA
ACAAAGCCAATGGACAATCAGTCGTGGTGCGCGTCAACGACCGTGGACCCTACGTCTCTGGTCGCTGCCTAGACCTCTCC
TCGGCCGCCTTCTCTCGGATCTCGTCGCTCAGCGCTGGCGTTGCCGACGTGACCTATGCGAAGGTCTCCTGA

Upstream 100 bases:

>100_bases
ACCCACTCACCTATACTGAGCAAATTTTGAGAATCTCTCAGGAACACGTACAGTTCATCAAGCCCTTTAAACCTGCGGCA
ACGCTCGGAAGGAACATCAC

Downstream 100 bases:

>100_bases
CCGAATACCATCGCAGCAGATTGTGACAGCGTCGGCCCCCCGATCCCTGGTGGATCGGGGGGCCGACGCTAGTTTCAATA
CTTCTAAGGCATCAACCAGC

Product: rare lipoprotein A (RlpA) family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MTNTSTNAGTTLKRTVALAAAASLAVMGTIAEEAHAAPAGNLGAHAEKAPTQHTKKAPAEQAKRATTYTARFALTRVHLN
VRSGHSTEYRRYGLLRPGDKLLIIGEDVRGWTPVNYRGKTAWVATRYITKMNRPVGIYAQRGDHNARSKAVQRDLSTLNY
FPAKWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTLGLLKSKADYQRAAAAEKSSTYKHAEHHSEHSSSTSRSTARPA
RNTSPDVSTSGIAGSCQASFYDDSQTASGESFSSSALTAASKTYSFGTRLKVTNKANGQSVVVRVNDRGPYVSGRCLDLS
SAAFSRISSLSAGVADVTYAKVS

Sequences:

>Translated_343_residues
MTNTSTNAGTTLKRTVALAAAASLAVMGTIAEEAHAAPAGNLGAHAEKAPTQHTKKAPAEQAKRATTYTARFALTRVHLN
VRSGHSTEYRRYGLLRPGDKLLIIGEDVRGWTPVNYRGKTAWVATRYITKMNRPVGIYAQRGDHNARSKAVQRDLSTLNY
FPAKWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTLGLLKSKADYQRAAAAEKSSTYKHAEHHSEHSSSTSRSTARPA
RNTSPDVSTSGIAGSCQASFYDDSQTASGESFSSSALTAASKTYSFGTRLKVTNKANGQSVVVRVNDRGPYVSGRCLDLS
SAAFSRISSLSAGVADVTYAKVS
>Mature_342_residues
TNTSTNAGTTLKRTVALAAAASLAVMGTIAEEAHAAPAGNLGAHAEKAPTQHTKKAPAEQAKRATTYTARFALTRVHLNV
RSGHSTEYRRYGLLRPGDKLLIIGEDVRGWTPVNYRGKTAWVATRYITKMNRPVGIYAQRGDHNARSKAVQRDLSTLNYF
PAKWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTLGLLKSKADYQRAAAAEKSSTYKHAEHHSEHSSSTSRSTARPAR
NTSPDVSTSGIAGSCQASFYDDSQTASGESFSSSALTAASKTYSFGTRLKVTNKANGQSVVVRVNDRGPYVSGRCLDLSS
AAFSRISSLSAGVADVTYAKVS

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=76, Percent_Identity=44.7368421052632, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 36576; Mature: 36445

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNTSTNAGTTLKRTVALAAAASLAVMGTIAEEAHAAPAGNLGAHAEKAPTQHTKKAPAE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHH
QAKRATTYTARFALTRVHLNVRSGHSTEYRRYGLLRPGDKLLIIGEDVRGWTPVNYRGKT
HHHHHHHHHHEEEEEEEEEEEECCCCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCC
AWVATRYITKMNRPVGIYAQRGDHNARSKAVQRDLSTLNYFPAKWVGLPYGPITTNAVKV
HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHH
FQRANALKQTGVTDAVTLGLLKSKADYQRAAAAEKSSTYKHAEHHSEHSSSTSRSTARPA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC
RNTSPDVSTSGIAGSCQASFYDDSQTASGESFSSSALTAASKTYSFGTRLKVTNKANGQS
CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCE
VVVRVNDRGPYVSGRCLDLSSAAFSRISSLSAGVADVTYAKVS
EEEEECCCCCCCCCEEEECHHHHHHHHHHHCCCCHHEEEEECC
>Mature Secondary Structure 
TNTSTNAGTTLKRTVALAAAASLAVMGTIAEEAHAAPAGNLGAHAEKAPTQHTKKAPAE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCHH
QAKRATTYTARFALTRVHLNVRSGHSTEYRRYGLLRPGDKLLIIGEDVRGWTPVNYRGKT
HHHHHHHHHHEEEEEEEEEEEECCCCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCC
AWVATRYITKMNRPVGIYAQRGDHNARSKAVQRDLSTLNYFPAKWVGLPYGPITTNAVKV
HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHH
FQRANALKQTGVTDAVTLGLLKSKADYQRAAAAEKSSTYKHAEHHSEHSSSTSRSTARPA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC
RNTSPDVSTSGIAGSCQASFYDDSQTASGESFSSSALTAASKTYSFGTRLKVTNKANGQS
CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCE
VVVRVNDRGPYVSGRCLDLSSAAFSRISSLSAGVADVTYAKVS
EEEEECCCCCCCCCEEEECHHHHHHHHHHHCCCCHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]