| Definition | Propionibacterium acnes KPA171202, complete genome. |
|---|---|
| Accession | NC_006085 |
| Length | 2,560,265 |
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The map label for this gene is oppD [H]
Identifier: 50843593
GI number: 50843593
Start: 2339607
End: 2340644
Strand: Direct
Name: oppD [H]
Synonym: PPA2155
Alternate gene names: 50843593
Gene position: 2339607-2340644 (Clockwise)
Preceding gene: 50843592
Following gene: 50843594
Centisome position: 91.38
GC content: 61.46
Gene sequence:
>1038_bases ATGGCACGAAAGACACTCACGCGCGCTCGTCTTCACATGGAACCGGTTGACGGGCTGCTCCTTAAAGTCGACGACCTGCA CGTGGAGTTCCGCACCCGTGACGGGGTAGCCAAGGCCATCAACGGGACGAGCTTCACCTTGTCTGAACGCGAAACCCTCG CCATTCTCGGTGAATCAGGGTCGGGTAAATCGGTGACTGCACAGGCAATTATGGGCATCCTCGAATCCCCTCCAGCCCAG ATCACTGGCGGGCGGATTGAGTACTGCGGGGTAGACCTGCTGACGGTGCCGGAAAAGAAACGTCGTCAGATCCGTGGCGA GCACATCTCGATGATCTTCCAGGACGCGTTGTCGTCGCTGAACCCGGTATTCCCGGTCGGATGGCAGATCGCCGAAATGT TCCGTGTTCACCGCGGTATGAACCGCTCTGATTCGATGTCCGAGGCGATCCGCCTCATGGAGAGGGTTCATATTCCCGCC GCCAAGGAGCGTGCCAACAACTACCCACACCAGTTCTCTGGCGGTATGCGTCAGCGCATCATGATTGCGATAGCGATCGC ACTCAACCCGTGGGTGCTCATCGCCGACGAGCCGACGACGGCCCTCGACGTCACTGTTCAAGCCCAGATCATGACCCTGC TCAAAGAGCTCCAGGAGGAGTCCGGCATGGGGTTGATCCTCATCACCCATGATCTTGGGGTGGTAGCCGACGTGGCCGAC GACATCGCGGTCATGTACTGCGGTCGGTTCGTCGAGCACGCTGACGTCCGCCGTCTCTACGACAACCCCGCCCACCCGTA TACCGTCGGTCTGCTGGATTCCATCCCGCGCCTGGACCAAAAGGGACACGAGCTATACGCCATCGGCGGTCTGCCGCCAT CCCTAACGAACCTGCCATCAGGGTGCTCCTTCCACCCGCGCTGCCGCTGGGCTACCGAGGAATGCCGCGTCGGCGGCGCT CCCCAGTTCGTCGAAGTCGAGCCCGGACGCTGGGCCGCCTGCCACCACACCGAGGAGGTCCTCCGTCGTGACCGTTAA
Upstream 100 bases:
>100_bases GTTCCCGTCACTATTCCTGTCTCTGGCGGTGCTGGCGTTCATCTTCCTTGGCGAGGCGGCACAGGACGCCTTCGACCCCA AACAGCACTGAGGTTTCGAC
Downstream 100 bases:
>100_bases GACCACAGCCGACAAAGCTAAACCCATTTTGTCGGTACGTGACCTCACCAAGCATTACCCGCTCAAATCCGGCGTGGTGC GCCATACCGTCGGCTACGTC
Product: putative peptide ABC transporter, ATP-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 345; Mature: 344
Protein sequence:
>345_residues MARKTLTRARLHMEPVDGLLLKVDDLHVEFRTRDGVAKAINGTSFTLSERETLAILGESGSGKSVTAQAIMGILESPPAQ ITGGRIEYCGVDLLTVPEKKRRQIRGEHISMIFQDALSSLNPVFPVGWQIAEMFRVHRGMNRSDSMSEAIRLMERVHIPA AKERANNYPHQFSGGMRQRIMIAIAIALNPWVLIADEPTTALDVTVQAQIMTLLKELQEESGMGLILITHDLGVVADVAD DIAVMYCGRFVEHADVRRLYDNPAHPYTVGLLDSIPRLDQKGHELYAIGGLPPSLTNLPSGCSFHPRCRWATEECRVGGA PQFVEVEPGRWAACHHTEEVLRRDR
Sequences:
>Translated_345_residues MARKTLTRARLHMEPVDGLLLKVDDLHVEFRTRDGVAKAINGTSFTLSERETLAILGESGSGKSVTAQAIMGILESPPAQ ITGGRIEYCGVDLLTVPEKKRRQIRGEHISMIFQDALSSLNPVFPVGWQIAEMFRVHRGMNRSDSMSEAIRLMERVHIPA AKERANNYPHQFSGGMRQRIMIAIAIALNPWVLIADEPTTALDVTVQAQIMTLLKELQEESGMGLILITHDLGVVADVAD DIAVMYCGRFVEHADVRRLYDNPAHPYTVGLLDSIPRLDQKGHELYAIGGLPPSLTNLPSGCSFHPRCRWATEECRVGGA PQFVEVEPGRWAACHHTEEVLRRDR >Mature_344_residues ARKTLTRARLHMEPVDGLLLKVDDLHVEFRTRDGVAKAINGTSFTLSERETLAILGESGSGKSVTAQAIMGILESPPAQI TGGRIEYCGVDLLTVPEKKRRQIRGEHISMIFQDALSSLNPVFPVGWQIAEMFRVHRGMNRSDSMSEAIRLMERVHIPAA KERANNYPHQFSGGMRQRIMIAIAIALNPWVLIADEPTTALDVTVQAQIMTLLKELQEESGMGLILITHDLGVVADVADD IAVMYCGRFVEHADVRRLYDNPAHPYTVGLLDSIPRLDQKGHELYAIGGLPPSLTNLPSGCSFHPRCRWATEECRVGGAP QFVEVEPGRWAACHHTEEVLRRDR
Specific function: Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961252, Length=244, Percent_Identity=29.9180327868852, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI4505771, Length=244, Percent_Identity=29.9180327868852, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI9961250, Length=244, Percent_Identity=29.9180327868852, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI42741659, Length=252, Percent_Identity=30.1587301587302, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI116734710, Length=246, Percent_Identity=25.609756097561, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI27436953, Length=246, Percent_Identity=22.3577235772358, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI153792144, Length=264, Percent_Identity=25.7575757575758, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI21536376, Length=218, Percent_Identity=25.6880733944954, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI48994883, Length=323, Percent_Identity=49.5356037151703, Blast_Score=323, Evalue=1e-89, Organism=Escherichia coli, GI1789963, Length=317, Percent_Identity=45.7413249211356, Blast_Score=291, Evalue=3e-80, Organism=Escherichia coli, GI145693107, Length=273, Percent_Identity=47.6190476190476, Blast_Score=248, Evalue=4e-67, Organism=Escherichia coli, GI1787759, Length=296, Percent_Identity=41.8918918918919, Blast_Score=244, Evalue=8e-66, Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=47.3076923076923, Blast_Score=238, Evalue=6e-64, Organism=Escherichia coli, GI1787500, Length=310, Percent_Identity=41.2903225806452, Blast_Score=218, Evalue=3e-58, Organism=Escherichia coli, GI1789962, Length=327, Percent_Identity=37.6146788990826, Blast_Score=214, Evalue=5e-57, Organism=Escherichia coli, GI1787548, Length=328, Percent_Identity=37.5, Blast_Score=204, Evalue=9e-54, Organism=Escherichia coli, GI1787758, Length=307, Percent_Identity=39.0879478827362, Blast_Score=192, Evalue=4e-50, Organism=Escherichia coli, GI1789890, Length=235, Percent_Identity=37.8723404255319, Blast_Score=139, Evalue=2e-34, Organism=Escherichia coli, GI48994997, Length=239, Percent_Identity=35.9832635983264, Blast_Score=134, Evalue=7e-33, Organism=Escherichia coli, GI1787547, Length=258, Percent_Identity=31.3953488372093, Blast_Score=124, Evalue=6e-30, Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=35.6807511737089, Blast_Score=121, Evalue=9e-29, Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=31.4285714285714, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1788225, Length=237, Percent_Identity=32.0675105485232, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1789032, Length=242, Percent_Identity=29.3388429752066, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1786398, Length=266, Percent_Identity=29.3233082706767, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI87081791, Length=245, Percent_Identity=31.0204081632653, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1787029, Length=243, Percent_Identity=31.2757201646091, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI1787370, Length=247, Percent_Identity=28.7449392712551, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI1787089, Length=224, Percent_Identity=30.8035714285714, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1788761, Length=247, Percent_Identity=29.5546558704453, Blast_Score=98, Evalue=1e-21, Organism=Escherichia coli, GI1787105, Length=219, Percent_Identity=33.7899543378995, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1786703, Length=197, Percent_Identity=34.010152284264, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI87081834, Length=217, Percent_Identity=30.4147465437788, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1786872, Length=210, Percent_Identity=30.4761904761905, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1789672, Length=241, Percent_Identity=29.4605809128631, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1790162, Length=238, Percent_Identity=27.7310924369748, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1786563, Length=231, Percent_Identity=30.3030303030303, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1788450, Length=235, Percent_Identity=27.6595744680851, Blast_Score=86, Evalue=5e-18, Organism=Escherichia coli, GI1788644, Length=179, Percent_Identity=28.4916201117318, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI87081709, Length=248, Percent_Identity=26.6129032258064, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789991, Length=217, Percent_Identity=28.110599078341, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1789873, Length=202, Percent_Identity=30.6930693069307, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1786319, Length=229, Percent_Identity=27.5109170305677, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1790534, Length=206, Percent_Identity=30.0970873786408, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1790467, Length=246, Percent_Identity=26.8292682926829, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI87082267, Length=247, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786253, Length=225, Percent_Identity=27.5555555555556, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1790739, Length=267, Percent_Identity=25.0936329588015, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787792, Length=218, Percent_Identity=27.9816513761468, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1790190, Length=251, Percent_Identity=25.4980079681275, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790544, Length=253, Percent_Identity=25.6916996047431, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788165, Length=229, Percent_Identity=24.0174672489083, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787972, Length=242, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787164, Length=211, Percent_Identity=27.4881516587678, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1786345, Length=101, Percent_Identity=30.6930693069307, Blast_Score=61, Evalue=1e-10, Organism=Caenorhabditis elegans, GI193202349, Length=232, Percent_Identity=26.7241379310345, Blast_Score=68, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17541710, Length=239, Percent_Identity=31.7991631799163, Blast_Score=68, Evalue=8e-12, Organism=Caenorhabditis elegans, GI71983523, Length=218, Percent_Identity=26.605504587156, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71983510, Length=218, Percent_Identity=26.605504587156, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71983516, Length=218, Percent_Identity=26.605504587156, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI212646699, Length=228, Percent_Identity=29.8245614035088, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI193209708, Length=239, Percent_Identity=30.1255230125523, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25146777, Length=238, Percent_Identity=27.7310924369748, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI281363262, Length=237, Percent_Identity=29.957805907173, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI24653245, Length=237, Percent_Identity=29.957805907173, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24643674, Length=215, Percent_Identity=25.1162790697674, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 38328; Mature: 38196
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARKTLTRARLHMEPVDGLLLKVDDLHVEFRTRDGVAKAINGTSFTLSERETLAILGESG CCCHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCHHHHCCCCEEEECCCCEEEEEECCC SGKSVTAQAIMGILESPPAQITGGRIEYCGVDLLTVPEKKRRQIRGEHISMIFQDALSSL CCCCHHHHHHHHHHCCCCCCCCCCEEEEECEEEEECCHHHHHHHCHHHHHHHHHHHHHHC NPVFPVGWQIAEMFRVHRGMNRSDSMSEAIRLMERVHIPAAKERANNYPHQFSGGMRQRI CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHCCCHHHHE MIAIAIALNPWVLIADEPTTALDVTVQAQIMTLLKELQEESGMGLILITHDLGVVADVAD EEEEEEEECCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH DIAVMYCGRFVEHADVRRLYDNPAHPYTVGLLDSIPRLDQKGHELYAIGGLPPSLTNLPS HHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCCCCCCEEEEECCCCCHHHCCCC GCSFHPRCRWATEECRVGGAPQFVEVEPGRWAACHHTEEVLRRDR CCCCCCCCCCCHHHHCCCCCCCEEEECCCCEEEHHHHHHHHHCCC >Mature Secondary Structure ARKTLTRARLHMEPVDGLLLKVDDLHVEFRTRDGVAKAINGTSFTLSERETLAILGESG CCHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCCHHHHCCCCEEEECCCCEEEEEECCC SGKSVTAQAIMGILESPPAQITGGRIEYCGVDLLTVPEKKRRQIRGEHISMIFQDALSSL CCCCHHHHHHHHHHCCCCCCCCCCEEEEECEEEEECCHHHHHHHCHHHHHHHHHHHHHHC NPVFPVGWQIAEMFRVHRGMNRSDSMSEAIRLMERVHIPAAKERANNYPHQFSGGMRQRI CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHCCCHHHHE MIAIAIALNPWVLIADEPTTALDVTVQAQIMTLLKELQEESGMGLILITHDLGVVADVAD EEEEEEEECCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH DIAVMYCGRFVEHADVRRLYDNPAHPYTVGLLDSIPRLDQKGHELYAIGGLPPSLTNLPS HHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCCCCCCCCCEEEEECCCCCHHHCCCC GCSFHPRCRWATEECRVGGAPQFVEVEPGRWAACHHTEEVLRRDR CCCCCCCCCCCHHHHCCCCCCCEEEECCCCEEEHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]