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The map label for this gene is amyC [H]

Identifier: 50843504

GI number: 50843504

Start: 2239088

End: 2239903

Strand: Direct

Name: amyC [H]

Synonym: PPA2060

Alternate gene names: 50843504

Gene position: 2239088-2239903 (Clockwise)

Preceding gene: 50843503

Following gene: 50843507

Centisome position: 87.46

GC content: 57.6

Gene sequence:

>816_bases
ATGACCAAACGCATCATTCAGCCAATTGGCGCGGTACTGCTAGCCGTGCTCGTCGTCGGGATACCCCTGTGGACGGTCGT
CGTCACTGCAGGGAAGTCCCAGGCCGAAGCACTCATCCCGGACATATCATTGCCACACCACTGGCAACTGTGGACCAACG
TCTCCACTGTCACCAGCCAGACAAGGATCGGCTGGGCATATCTGGGCTCGTTGTTCCTGCTGGTGCCCTCGGTGGTCATC
GTCTTGATCATCGGATCGATGGCATCGTGGGTTTTAGCTCGGCGCACAGGCAAGCTCGTCTCCGTGATCTACGCGCTGGG
GATTTCGGGCATCATCCTGCCGCCAGCGGTCGTCACCTTGGTGTTACTGCTGCGTCAGCTGGGATTGGCTGGCCGCCCCA
TCGGAATGATCTGCGCCTATGTCGGGATGTACCTGTCGACGGTGATTTTCTTCGTCACTGGATTCGTCCGCACGATACCC
GAGTCCCTCGAGGAGGCGGCCCGAATCGATGGAGCTGGACCAATGCGCGTCTTTGTGACGGTCATCCTCCCCTTGCTGCG
TCCAGTGCTGGCAACTGCGACGATTCTCATCAGCCTGTACGTGTGGAACGACGTCTTCTATGCCTTCTTCGTCGTAGGAG
GCCGGATGGACACCTTGCCGCTGAACTTGTTTACAGTCGCCAGCGCCGGGGTACACCTCAATAACTGGCATCTCATCTTC
ACCTATGTGCTGCTCATGAGCGTGCCGATCGTGATGCTGTTCATTGCATTCCAGCGCAGCATTATTTCAGGCATTACTTC
GGGTGCGGTCAAGTAA

Upstream 100 bases:

>100_bases
ACGCTCAGGCGACGACGATGAGCCTGGTGCTCTTCGTGGCCGTCGTCATCTTGGCATTCCCCGTGATCGGGATGCTTCGT
CGCCGTGAGGGAAGGATGTC

Downstream 100 bases:

>100_bases
CCCTTCTTACTGCCTGGGGCCTTCGATCGGACTGGCGAAATCTCCACAACGCTCAACTGGTAGTGACAGTGAGGTCTGGA
TCCTGCATGTCTTCGTCGAA

Product: binding-protein-dependent transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MTKRIIQPIGAVLLAVLVVGIPLWTVVVTAGKSQAEALIPDISLPHHWQLWTNVSTVTSQTRIGWAYLGSLFLLVPSVVI
VLIIGSMASWVLARRTGKLVSVIYALGISGIILPPAVVTLVLLLRQLGLAGRPIGMICAYVGMYLSTVIFFVTGFVRTIP
ESLEEAARIDGAGPMRVFVTVILPLLRPVLATATILISLYVWNDVFYAFFVVGGRMDTLPLNLFTVASAGVHLNNWHLIF
TYVLLMSVPIVMLFIAFQRSIISGITSGAVK

Sequences:

>Translated_271_residues
MTKRIIQPIGAVLLAVLVVGIPLWTVVVTAGKSQAEALIPDISLPHHWQLWTNVSTVTSQTRIGWAYLGSLFLLVPSVVI
VLIIGSMASWVLARRTGKLVSVIYALGISGIILPPAVVTLVLLLRQLGLAGRPIGMICAYVGMYLSTVIFFVTGFVRTIP
ESLEEAARIDGAGPMRVFVTVILPLLRPVLATATILISLYVWNDVFYAFFVVGGRMDTLPLNLFTVASAGVHLNNWHLIF
TYVLLMSVPIVMLFIAFQRSIISGITSGAVK
>Mature_270_residues
TKRIIQPIGAVLLAVLVVGIPLWTVVVTAGKSQAEALIPDISLPHHWQLWTNVSTVTSQTRIGWAYLGSLFLLVPSVVIV
LIIGSMASWVLARRTGKLVSVIYALGISGIILPPAVVTLVLLLRQLGLAGRPIGMICAYVGMYLSTVIFFVTGFVRTIPE
SLEEAARIDGAGPMRVFVTVILPLLRPVLATATILISLYVWNDVFYAFFVVGGRMDTLPLNLFTVASAGVHLNNWHLIFT
YVLLMSVPIVMLFIAFQRSIISGITSGAVK

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=282, Percent_Identity=27.3049645390071, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789860, Length=142, Percent_Identity=27.4647887323944, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29381; Mature: 29250

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TKRIIQPIGAVLLAVLVVGIPLWTVVVTAGKSQAEALIPDISLPHHWQLWTNVSTVTSQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHH
TRIGWAYLGSLFLLVPSVVIVLIIGSMASWVLARRTGKLVSVIYALGISGIILPPAVVTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VLLLRQLGLAGRPIGMICAYVGMYLSTVIFFVTGFVRTIPESLEEAARIDGAGPMRVFVT
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
VILPLLRPVLATATILISLYVWNDVFYAFFVVGGRMDTLPLNLFTVASAGVHLNNWHLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCEEECCHHHHH
TYVLLMSVPIVMLFIAFQRSIISGITSGAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]