Click here to switch to the map view.

The map label for this gene is 50843348

Identifier: 50843348

GI number: 50843348

Start: 2056727

End: 2057155

Strand: Reverse

Name: 50843348

Synonym: PPA1896

Alternate gene names: NA

Gene position: 2057155-2056727 (Counterclockwise)

Preceding gene: 50843349

Following gene: 50843347

Centisome position: 80.35

GC content: 58.97

Gene sequence:

>429_bases
ATGTCGATCAGTTCTCATGACGTTGGGCGCACCTACCCGACGACAGACCCGTACCTTGTTACCGCAGAGAAAATCCGGGA
GCTTGCCACTGCTTTGGGGGATAACGCTCCGGCCTATCGAGGCGACGACCCCATTGCTCCGCCCACCTTCGCGATGGTGT
TGGCGTCTCGGGCGTGGGAGGCGTTGTTCGACGACGAGCAGCTTGACCTGCGCCTGGAGCACATGATCCACACTGACCAG
TCCTTTCACTGGATCCGTCCGCTTCATGAAGGCGACGAGGTGACAGCCGCCCTCACTATCACTTCTGTGCGTACCCGAGG
CAATACCGACATCATCGGCATTAACGTCTCGTTGGATCACGTCGACGGCGAGCACTTGGGCAATGCCACTTCAACGTTGT
GGCATACCCGTCCAGAGGGGAACGCATGA

Upstream 100 bases:

>100_bases
GAGGCGGCCCCTCGTGCTGTGTGTTATGAGCAATTGCTGTGTGAGCAATTAAATGCTCCGAGGTATTCTGTGGCGGCGGG
GTCTGGGATAGCCTGACGAC

Downstream 100 bases:

>100_bases
GCGTACAGCTGTCGGAGGGGCAGACTTTCGGCCCGCGAGCCATCAACGTTACTCGGACTACTCTGGTCCGTTACGCAGGC
GCATCCGGCGACTTTAACCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MSISSHDVGRTYPTTDPYLVTAEKIRELATALGDNAPAYRGDDPIAPPTFAMVLASRAWEALFDDEQLDLRLEHMIHTDQ
SFHWIRPLHEGDEVTAALTITSVRTRGNTDIIGINVSLDHVDGEHLGNATSTLWHTRPEGNA

Sequences:

>Translated_142_residues
MSISSHDVGRTYPTTDPYLVTAEKIRELATALGDNAPAYRGDDPIAPPTFAMVLASRAWEALFDDEQLDLRLEHMIHTDQ
SFHWIRPLHEGDEVTAALTITSVRTRGNTDIIGINVSLDHVDGEHLGNATSTLWHTRPEGNA
>Mature_141_residues
SISSHDVGRTYPTTDPYLVTAEKIRELATALGDNAPAYRGDDPIAPPTFAMVLASRAWEALFDDEQLDLRLEHMIHTDQS
FHWIRPLHEGDEVTAALTITSVRTRGNTDIIGINVSLDHVDGEHLGNATSTLWHTRPEGNA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0336 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1896_PROAC (Q6A6J6)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_056575.1
- ProteinModelPortal:   Q6A6J6
- GeneID:   2931955
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA1896
- HOGENOM:   HBG659807
- OMA:   PYEVGRE
- ProtClustDB:   CLSK2764244
- BioCyc:   PACN267747:PPA1896-MONOMER
- HAMAP:   MF_00799
- InterPro:   IPR016709
- PIRSF:   PIRSF018072

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15700; Mature: 15568

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISSHDVGRTYPTTDPYLVTAEKIRELATALGDNAPAYRGDDPIAPPTFAMVLASRAWE
CCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ALFDDEQLDLRLEHMIHTDQSFHWIRPLHEGDEVTAALTITSVRTRGNTDIIGINVSLDH
HHCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEC
VDGEHLGNATSTLWHTRPEGNA
CCCHHCCCCCHHEEECCCCCCC
>Mature Secondary Structure 
SISSHDVGRTYPTTDPYLVTAEKIRELATALGDNAPAYRGDDPIAPPTFAMVLASRAWE
CCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
ALFDDEQLDLRLEHMIHTDQSFHWIRPLHEGDEVTAALTITSVRTRGNTDIIGINVSLDH
HHCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEC
VDGEHLGNATSTLWHTRPEGNA
CCCHHCCCCCHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA