| Definition | Propionibacterium acnes KPA171202, complete genome. |
|---|---|
| Accession | NC_006085 |
| Length | 2,560,265 |
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The map label for this gene is nagJ [H]
Identifier: 50843278
GI number: 50843278
Start: 1989016
End: 1990425
Strand: Direct
Name: nagJ [H]
Synonym: PPA1821
Alternate gene names: 50843278
Gene position: 1989016-1990425 (Clockwise)
Preceding gene: 50843277
Following gene: 50843279
Centisome position: 77.69
GC content: 65.25
Gene sequence:
>1410_bases ATGGCCGACGACGGTGCACGCCTGCTGGCCATGCAGTCGAATTTCTACGACACCCCTGAGGTCACATGGGCCAGCGATGC TGCCGGGACCCCGAGCGTCACCGCGCCGGGTCGTCACGGCGAGGTCACCCTCGCAACCCTGGCAGCGCCGGGGACGAAGG CTTCCCCAGACGGTTCGTCGGTGACCGTCGATTCCACTGCGGACGCCGATGGCACGTCTGCCTCGACGATCAGTTCCCTC ACTGCAAGCGTCGATCTGGGAGCCGAAGGTGGCGTCCAGAAGGTACGATTCGTCGATCAGCACCGCCGTGGCCTGCTGAC CGCAGGTGGGCTGTATGACCTGCGCGTCTCACACGCCTGGAGCCACACCGGCACCTTTCCGATCACGGTGAAGCTGTCGG ACGGCCGGGTCCTCGTCACCTCGGTGGCGGTTCGCGACGGAGCCCCGGCACAACCCACCGGCCCCGTCGTGGGCCCCTGC GACAAACCAACCGTCTCCTTCCCCTCCGGCAGCTCCGTCCGCGACGATTCTCGACTCGGCGTCTCGTTCACGCACCTAAC ACCGAACACTTGGGTCGACGTCCTCATCGACGGCACGAAGATCGGCACGGTGCACACGAACGCCAGCGGTTCGGGCACCC AGGACGTCCCCATCACCTATCAGACCCCCAGCGGAGCGCACCTGCTGCGCATCGCCGGACCCGACGGACGTTTCGTGGAG AAGGTGTTCACAGTCACGTCCAAGACGCCGCCCTTCCTCAACGCCATCACGAGCGGAGTCACCGCCAAGGCTTCCAGTGA GGCAAGCAATGAGACCGCTCCCAATGGCCGGGCATCGGCTGCCGTTGACGGTAATCCAAACACGTTCTGGCACTCCCGCT GGGAGGCACCCGTTGCGACCTATCCGCATACCTTGACGGTCGATCTCGGTCGCGAGTACGCATTGTCGGCGATGAGGTGG GTCTCCCGCCGGGGCAATCCCAACGGCCGAGTCAAGACCCTCGTCCTGGCGTTCTCGACCGACGGTTCCCATTGGACTGG CAAACAACCAGTCACTCTGCCCTCCAGCTCTTACCCAACGATCGTCAGCCTCTCGAAACAGGCAGACGCACGGTATGTGC GAATCACGATGACCTCACCTCAGGACGCTTCCCAGCCCTTCGCGGCGATCGGTGAGGTGACTTTCGCTGGCCTTGCAAAC GGCCATGCCGATCAGCCCCGGCACGATCCGACGGCGCGCACGTGGACCCCGCCGGCTCATTGTCAGGTGACGCCCGAACC TTCTCCCACGGGGCGCCCCACCACAACACAACCCACCACGACTGCCGCGAGCGGTTCCACAGCGACCCCGACCAGTACCG CTTCCCAGGCAAGTACGAGGCCCACGAGGCTTCCTGCGACGGGACGCTAA
Upstream 100 bases:
>100_bases CAGCCAATCACAGTATCTGGCCTTCCCCCGTGCCCTCGCCCATGCCGAGATCGGCTGGACACCGCAGTCGCGCAGATCGG TCGGTGACTTCCTCAACCGG
Downstream 100 bases:
>100_bases GGACAAGAGTTCCTTTCATGACGCACGCGCAACTAGATGTGTCCGCATGTGACCGGAGAGCCCGCGCCCAGCCGCCCGCG ACACTTCCGGGCTGAGACAC
Product: putative sialidase
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; Beta-hexosaminidase; GH84; Hexosaminidase B; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MADDGARLLAMQSNFYDTPEVTWASDAAGTPSVTAPGRHGEVTLATLAAPGTKASPDGSSVTVDSTADADGTSASTISSL TASVDLGAEGGVQKVRFVDQHRRGLLTAGGLYDLRVSHAWSHTGTFPITVKLSDGRVLVTSVAVRDGAPAQPTGPVVGPC DKPTVSFPSGSSVRDDSRLGVSFTHLTPNTWVDVLIDGTKIGTVHTNASGSGTQDVPITYQTPSGAHLLRIAGPDGRFVE KVFTVTSKTPPFLNAITSGVTAKASSEASNETAPNGRASAAVDGNPNTFWHSRWEAPVATYPHTLTVDLGREYALSAMRW VSRRGNPNGRVKTLVLAFSTDGSHWTGKQPVTLPSSSYPTIVSLSKQADARYVRITMTSPQDASQPFAAIGEVTFAGLAN GHADQPRHDPTARTWTPPAHCQVTPEPSPTGRPTTTQPTTTAASGSTATPTSTASQASTRPTRLPATGR
Sequences:
>Translated_469_residues MADDGARLLAMQSNFYDTPEVTWASDAAGTPSVTAPGRHGEVTLATLAAPGTKASPDGSSVTVDSTADADGTSASTISSL TASVDLGAEGGVQKVRFVDQHRRGLLTAGGLYDLRVSHAWSHTGTFPITVKLSDGRVLVTSVAVRDGAPAQPTGPVVGPC DKPTVSFPSGSSVRDDSRLGVSFTHLTPNTWVDVLIDGTKIGTVHTNASGSGTQDVPITYQTPSGAHLLRIAGPDGRFVE KVFTVTSKTPPFLNAITSGVTAKASSEASNETAPNGRASAAVDGNPNTFWHSRWEAPVATYPHTLTVDLGREYALSAMRW VSRRGNPNGRVKTLVLAFSTDGSHWTGKQPVTLPSSSYPTIVSLSKQADARYVRITMTSPQDASQPFAAIGEVTFAGLAN GHADQPRHDPTARTWTPPAHCQVTPEPSPTGRPTTTQPTTTAASGSTATPTSTASQASTRPTRLPATGR >Mature_468_residues ADDGARLLAMQSNFYDTPEVTWASDAAGTPSVTAPGRHGEVTLATLAAPGTKASPDGSSVTVDSTADADGTSASTISSLT ASVDLGAEGGVQKVRFVDQHRRGLLTAGGLYDLRVSHAWSHTGTFPITVKLSDGRVLVTSVAVRDGAPAQPTGPVVGPCD KPTVSFPSGSSVRDDSRLGVSFTHLTPNTWVDVLIDGTKIGTVHTNASGSGTQDVPITYQTPSGAHLLRIAGPDGRFVEK VFTVTSKTPPFLNAITSGVTAKASSEASNETAPNGRASAAVDGNPNTFWHSRWEAPVATYPHTLTVDLGREYALSAMRWV SRRGNPNGRVKTLVLAFSTDGSHWTGKQPVTLPSSSYPTIVSLSKQADARYVRITMTSPQDASQPFAAIGEVTFAGLANG HADQPRHDPTARTWTPPAHCQVTPEPSPTGRPTTTQPTTTAASGSTATPTSTASQASTRPTRLPATGR
Specific function: Biological function unknown. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fibronectin type-III domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR011496 - InterPro: IPR008965 - InterPro: IPR000421 - InterPro: IPR018452 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR008979 - InterPro: IPR017853 - InterPro: IPR013783 [H]
Pfam domain/function: PF00754 F5_F8_type_C; PF00041 fn3; PF02838 Glyco_hydro_20b; PF07555 NAGidase [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 48786; Mature: 48655
Theoretical pI: Translated: 8.28; Mature: 8.28
Prosite motif: PS50022 FA58C_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADDGARLLAMQSNFYDTPEVTWASDAAGTPSVTAPGRHGEVTLATLAAPGTKASPDGSS CCCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCE VTVDSTADADGTSASTISSLTASVDLGAEGGVQKVRFVDQHRRGLLTAGGLYDLRVSHAW EEECCCCCCCCCCHHHHHHHEEEEECCCCCCCHHHHHHHHHCCCEEEECCEEEEEEEECC SHTGTFPITVKLSDGRVLVTSVAVRDGAPAQPTGPVVGPCDKPTVSFPSGSSVRDDSRLG CCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCCCEECCCCCCEEECCCCCCCCCCCCCC VSFTHLTPNTWVDVLIDGTKIGTVHTNASGSGTQDVPITYQTPSGAHLLRIAGPDGRFVE EEEEEECCCCEEEEEECCEEEEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHH KVFTVTSKTPPFLNAITSGVTAKASSEASNETAPNGRASAAVDGNPNTFWHSRWEAPVAT HHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCEEEECCCCCCEECCCCCCCCCC YPHTLTVDLGREYALSAMRWVSRRGNPNGRVKTLVLAFSTDGSHWTGKQPVTLPSSSYPT CCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCEECCCCCCCE IVSLSKQADARYVRITMTSPQDASQPFAAIGEVTFAGLANGHADQPRHDPTARTWTPPAH EEEECCCCCCEEEEEEECCCCCCCCCHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCC CQVTPEPSPTGRPTTTQPTTTAASGSTATPTSTASQASTRPTRLPATGR EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ADDGARLLAMQSNFYDTPEVTWASDAAGTPSVTAPGRHGEVTLATLAAPGTKASPDGSS CCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCE VTVDSTADADGTSASTISSLTASVDLGAEGGVQKVRFVDQHRRGLLTAGGLYDLRVSHAW EEECCCCCCCCCCHHHHHHHEEEEECCCCCCCHHHHHHHHHCCCEEEECCEEEEEEEECC SHTGTFPITVKLSDGRVLVTSVAVRDGAPAQPTGPVVGPCDKPTVSFPSGSSVRDDSRLG CCCCCEEEEEEECCCEEEEEEEEECCCCCCCCCCCEECCCCCCEEECCCCCCCCCCCCCC VSFTHLTPNTWVDVLIDGTKIGTVHTNASGSGTQDVPITYQTPSGAHLLRIAGPDGRFVE EEEEEECCCCEEEEEECCEEEEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCHHHH KVFTVTSKTPPFLNAITSGVTAKASSEASNETAPNGRASAAVDGNPNTFWHSRWEAPVAT HHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCEEEECCCCCCEECCCCCCCCCC YPHTLTVDLGREYALSAMRWVSRRGNPNGRVKTLVLAFSTDGSHWTGKQPVTLPSSSYPT CCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCEECCCCCCCE IVSLSKQADARYVRITMTSPQDASQPFAAIGEVTFAGLANGHADQPRHDPTARTWTPPAH EEEECCCCCCEEEEEEECCCCCCCCCHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCC CQVTPEPSPTGRPTTTQPTTTAASGSTATPTSTASQASTRPTRLPATGR EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA