| Definition | Propionibacterium acnes KPA171202, complete genome. |
|---|---|
| Accession | NC_006085 |
| Length | 2,560,265 |
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The map label for this gene is yfiL [H]
Identifier: 50843273
GI number: 50843273
Start: 1981437
End: 1982270
Strand: Reverse
Name: yfiL [H]
Synonym: PPA1817
Alternate gene names: 50843273
Gene position: 1982270-1981437 (Counterclockwise)
Preceding gene: 50843280
Following gene: 50843272
Centisome position: 77.42
GC content: 62.95
Gene sequence:
>834_bases ATGAGTGATGACCCCACCGGATCCCGGACCATCCCACAGGCAGCTGTTTCCGTCCCTGCGGACACCCGGCCACCGGGCCA ACCCGCGGTCATGATCGAGGGACTGACCAAACGGTTTGGGCCCAAGGTCGCCGTCGACAACCTCACCATGTGGGTTCCGC GCGGATCAATGTTCGGCTTCGTTGGTCCCAACGGCGCTGGCAAGACGACGACCCTCTCGATGGTTACCGGGCTGCTGCGT CCCGATGCCGGTCGGGTTGAGGTGCTCGGCCATGACGTCTGGGCTGATCCGGCGGCGGCGAAGGCCCAGATGGGTGTCCT GCCCGACGGGATGAAGACCTTCGACCGTCTCTCTGGCCGCGAGCTACTCCGCTTCTGCGGGATGCTACACCGACTTGACG AGGCCACCATCAACGAACGCGCAGAGGGGCTCCTTGACGCCCTCAGCCTGACAAGCGCTGCCGACCTCCTGGTGTGTGAC TACTCCGCGGGTATGACCAAGAAGATTGATTTGGCCTGCGCCATTATCGCCGATCCTGCCGTTCTCGTTCTCGACGAGCC CCTCGAATCCGTCGATCCACTCTCGGGTCAGACCATTCGGTCAATCCTGCGCCGCTTCGTTGACGGTGGCGGGACGGTCG TCATATCCAGCCACGTCATGGAGCTCGTCGAGTCCTTGTGCGACTCGGTGGCCGTTATCGCCGGGGGACGTCTCCACGCT ATTGGTGCCCTCGACGACGTATGCCAGGGCAAGTCTTTGCAAAATAGGTTCGTCGAACTCGTCGGCGGCAACGCCAACAT GGGGGAGGGTCTTACGTGGTTGCGCAGGTCCTGA
Upstream 100 bases:
>100_bases AACAAGTTGGATCGGATACAGAGAGACTGTTATGAATGATTCTGACTTTTTCTGAGGGTGGCCTGTAAGACTGGCCCTTT GAGATGATGTGATGAGTAAT
Downstream 100 bases:
>100_bases AGCACCAGTGGGCCACCACCCTGGTCCCCCTTCGCAAGGGTGCCAAGCCGGCCGAGATCTTCGGACTCATCTTTCTGGTC CTCGTGTCCCTGTTCCTCGG
Product: ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 277; Mature: 276
Protein sequence:
>277_residues MSDDPTGSRTIPQAAVSVPADTRPPGQPAVMIEGLTKRFGPKVAVDNLTMWVPRGSMFGFVGPNGAGKTTTLSMVTGLLR PDAGRVEVLGHDVWADPAAAKAQMGVLPDGMKTFDRLSGRELLRFCGMLHRLDEATINERAEGLLDALSLTSAADLLVCD YSAGMTKKIDLACAIIADPAVLVLDEPLESVDPLSGQTIRSILRRFVDGGGTVVISSHVMELVESLCDSVAVIAGGRLHA IGALDDVCQGKSLQNRFVELVGGNANMGEGLTWLRRS
Sequences:
>Translated_277_residues MSDDPTGSRTIPQAAVSVPADTRPPGQPAVMIEGLTKRFGPKVAVDNLTMWVPRGSMFGFVGPNGAGKTTTLSMVTGLLR PDAGRVEVLGHDVWADPAAAKAQMGVLPDGMKTFDRLSGRELLRFCGMLHRLDEATINERAEGLLDALSLTSAADLLVCD YSAGMTKKIDLACAIIADPAVLVLDEPLESVDPLSGQTIRSILRRFVDGGGTVVISSHVMELVESLCDSVAVIAGGRLHA IGALDDVCQGKSLQNRFVELVGGNANMGEGLTWLRRS >Mature_276_residues SDDPTGSRTIPQAAVSVPADTRPPGQPAVMIEGLTKRFGPKVAVDNLTMWVPRGSMFGFVGPNGAGKTTTLSMVTGLLRP DAGRVEVLGHDVWADPAAAKAQMGVLPDGMKTFDRLSGRELLRFCGMLHRLDEATINERAEGLLDALSLTSAADLLVCDY SAGMTKKIDLACAIIADPAVLVLDEPLESVDPLSGQTIRSILRRFVDGGGTVVISSHVMELVESLCDSVAVIAGGRLHAI GALDDVCQGKSLQNRFVELVGGNANMGEGLTWLRRS
Specific function: Unknown
COG id: COG1131
COG function: function code V; ABC-type multidrug transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI150417984, Length=223, Percent_Identity=38.1165919282511, Blast_Score=137, Evalue=1e-32, Organism=Homo sapiens, GI47078218, Length=236, Percent_Identity=35.5932203389831, Blast_Score=127, Evalue=1e-29, Organism=Homo sapiens, GI45446740, Length=236, Percent_Identity=35.5932203389831, Blast_Score=127, Evalue=1e-29, Organism=Homo sapiens, GI116734710, Length=217, Percent_Identity=34.1013824884793, Blast_Score=125, Evalue=4e-29, Organism=Homo sapiens, GI21536376, Length=218, Percent_Identity=34.8623853211009, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI105990541, Length=223, Percent_Identity=34.5291479820628, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI27881501, Length=217, Percent_Identity=33.6405529953917, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI30795238, Length=217, Percent_Identity=33.6405529953917, Blast_Score=117, Evalue=2e-26, Organism=Homo sapiens, GI31657092, Length=272, Percent_Identity=29.0441176470588, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI27436953, Length=207, Percent_Identity=29.4685990338164, Blast_Score=104, Evalue=9e-23, Organism=Homo sapiens, GI27477115, Length=204, Percent_Identity=30.3921568627451, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI153792144, Length=225, Percent_Identity=28.8888888888889, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI6005701, Length=207, Percent_Identity=29.951690821256, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI27262624, Length=249, Percent_Identity=26.5060240963855, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI27262626, Length=249, Percent_Identity=26.5060240963855, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI11967969, Length=242, Percent_Identity=23.9669421487603, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI87081782, Length=223, Percent_Identity=33.6322869955157, Blast_Score=139, Evalue=1e-34, Organism=Escherichia coli, GI48994943, Length=278, Percent_Identity=29.8561151079137, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1789593, Length=229, Percent_Identity=28.82096069869, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1786319, Length=211, Percent_Identity=27.9620853080569, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI87081709, Length=239, Percent_Identity=27.6150627615063, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1786398, Length=224, Percent_Identity=29.9107142857143, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1788761, Length=248, Percent_Identity=27.4193548387097, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1790525, Length=268, Percent_Identity=23.8805970149254, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1789864, Length=228, Percent_Identity=25, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1790190, Length=220, Percent_Identity=26.8181818181818, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI48995001, Length=219, Percent_Identity=26.9406392694064, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87081791, Length=262, Percent_Identity=24.4274809160305, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788450, Length=256, Percent_Identity=27.34375, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1790467, Length=215, Percent_Identity=26.9767441860465, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787370, Length=241, Percent_Identity=25.7261410788382, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787089, Length=232, Percent_Identity=25.8620689655172, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1788897, Length=222, Percent_Identity=26.5765765765766, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787712, Length=244, Percent_Identity=24.1803278688525, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788472, Length=260, Percent_Identity=25.3846153846154, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787029, Length=214, Percent_Identity=24.2990654205607, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789751, Length=221, Percent_Identity=26.2443438914027, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1788225, Length=233, Percent_Identity=26.1802575107296, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1789586, Length=218, Percent_Identity=27.9816513761468, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788165, Length=244, Percent_Identity=29.5081967213115, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786872, Length=181, Percent_Identity=25.414364640884, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786345, Length=231, Percent_Identity=24.6753246753247, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787759, Length=246, Percent_Identity=25.2032520325203, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1790739, Length=224, Percent_Identity=25.4464285714286, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1789032, Length=224, Percent_Identity=23.2142857142857, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789991, Length=214, Percent_Identity=24.2990654205607, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI87082268, Length=210, Percent_Identity=22.3809523809524, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787105, Length=169, Percent_Identity=27.2189349112426, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=22.1153846153846, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1788210, Length=216, Percent_Identity=22.6851851851852, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI48994883, Length=224, Percent_Identity=25.8928571428571, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789672, Length=229, Percent_Identity=20.0873362445415, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786703, Length=225, Percent_Identity=25.3333333333333, Blast_Score=62, Evalue=6e-11, Organism=Escherichia coli, GI1786253, Length=210, Percent_Identity=24.2857142857143, Blast_Score=61, Evalue=8e-11, Organism=Escherichia coli, GI1787792, Length=238, Percent_Identity=22.2689075630252, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI115533608, Length=236, Percent_Identity=31.3559322033898, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17510237, Length=217, Percent_Identity=30.4147465437788, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI71983523, Length=199, Percent_Identity=31.1557788944724, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71983516, Length=199, Percent_Identity=31.1557788944724, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71983510, Length=199, Percent_Identity=31.1557788944724, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17565586, Length=223, Percent_Identity=31.390134529148, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71984940, Length=215, Percent_Identity=24.1860465116279, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=215, Percent_Identity=26.046511627907, Blast_Score=66, Evalue=7e-12, Organism=Drosophila melanogaster, GI24643674, Length=228, Percent_Identity=32.0175438596491, Blast_Score=129, Evalue=2e-30, Organism=Drosophila melanogaster, GI24666092, Length=246, Percent_Identity=29.6747967479675, Blast_Score=124, Evalue=8e-29, Organism=Drosophila melanogaster, GI28574150, Length=245, Percent_Identity=30.2040816326531, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI116007328, Length=245, Percent_Identity=30.2040816326531, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI221512771, Length=228, Percent_Identity=28.0701754385965, Blast_Score=111, Evalue=6e-25, Organism=Drosophila melanogaster, GI24650855, Length=230, Percent_Identity=32.1739130434783, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24650853, Length=230, Percent_Identity=32.1739130434783, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI85725262, Length=263, Percent_Identity=30.4182509505703, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI281362751, Length=256, Percent_Identity=30.859375, Blast_Score=107, Evalue=7e-24, Organism=Drosophila melanogaster, GI28573573, Length=228, Percent_Identity=27.6315789473684, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI28573571, Length=228, Percent_Identity=27.6315789473684, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI24648314, Length=219, Percent_Identity=26.9406392694064, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI24582014, Length=200, Percent_Identity=30.5, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI24582012, Length=200, Percent_Identity=30.5, Blast_Score=94, Evalue=7e-20, Organism=Drosophila melanogaster, GI116007184, Length=197, Percent_Identity=27.9187817258883, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI221500365, Length=197, Percent_Identity=27.9187817258883, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI28571209, Length=257, Percent_Identity=21.011673151751, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 29250; Mature: 29119
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDPTGSRTIPQAAVSVPADTRPPGQPAVMIEGLTKRFGPKVAVDNLTMWVPRGSMFGF CCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEHHHHHCCCCEEECCEEEEEECCCEEEE VGPNGAGKTTTLSMVTGLLRPDAGRVEVLGHDVWADPAAAKAQMGVLPDGMKTFDRLSGR ECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHCCHH ELLRFCGMLHRLDEATINERAEGLLDALSLTSAADLLVCDYSAGMTKKIDLACAIIADPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEHHEEEEEECCCE VLVLDEPLESVDPLSGQTIRSILRRFVDGGGTVVISSHVMELVESLCDSVAVIAGGRLHA EEEECCCHHHCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEE IGALDDVCQGKSLQNRFVELVGGNANMGEGLTWLRRS HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHCC >Mature Secondary Structure SDDPTGSRTIPQAAVSVPADTRPPGQPAVMIEGLTKRFGPKVAVDNLTMWVPRGSMFGF CCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEHHHHHCCCCEEECCEEEEEECCCEEEE VGPNGAGKTTTLSMVTGLLRPDAGRVEVLGHDVWADPAAAKAQMGVLPDGMKTFDRLSGR ECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHCCHH ELLRFCGMLHRLDEATINERAEGLLDALSLTSAADLLVCDYSAGMTKKIDLACAIIADPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEHHEEEEEECCCE VLVLDEPLESVDPLSGQTIRSILRRFVDGGGTVVISSHVMELVESLCDSVAVIAGGRLHA EEEECCCHHHCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEE IGALDDVCQGKSLQNRFVELVGGNANMGEGLTWLRRS HHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8973323; 9384377 [H]