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The map label for this gene is hup [H]

Identifier: 50843144

GI number: 50843144

Start: 1834697

End: 1834972

Strand: Direct

Name: hup [H]

Synonym: PPA1682

Alternate gene names: 50843144

Gene position: 1834697-1834972 (Clockwise)

Preceding gene: 50843143

Following gene: 50843147

Centisome position: 71.66

GC content: 61.59

Gene sequence:

>276_bases
ATGACCAAGTCCGAGCTCATCAAGACCGTCGCCAAGCAGGCCTCGCTCACTGAGGCCCAGACCAACGAGGCCGTTAAGGC
TCTTACCGACGTCATCACCGCCGCTCTAGCCAAGGGTGAGAAGGTGCAGCTTCCCGGTCTATTCACCGCTGAAACCGTTG
AGCGTCCCGCTCGCAATGGCCGCAACCCTCGCACCGGCGAGTCCATGACCATCCCGGCTCACAAGGCCGTCAAGATCTCG
GCCTCCAGCACTCTCAAGAAGGCCGTCGCTGACTGA

Upstream 100 bases:

>100_bases
GCGGTTTTGGGCTTGACTGAGAACCGACAACCGCTAATGTCAACTATGAGAGAACCGGCAACAAGCCCGAAATCGAACAC
AGTCCATTTGAGGAGACCCC

Downstream 100 bases:

>100_bases
GCGACCGCTCAGAGTTGTTGGATCTCAACATGTGGGGTCCGGTGCTTCACGGCACCGGACCCCAATTTTTCGTTATTACG
CTCGCACCAGCTCACGCATG

Product: DNA-binding protein HU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 90

Protein sequence:

>91_residues
MTKSELIKTVAKQASLTEAQTNEAVKALTDVITAALAKGEKVQLPGLFTAETVERPARNGRNPRTGESMTIPAHKAVKIS
ASSTLKKAVAD

Sequences:

>Translated_91_residues
MTKSELIKTVAKQASLTEAQTNEAVKALTDVITAALAKGEKVQLPGLFTAETVERPARNGRNPRTGESMTIPAHKAVKIS
ASSTLKKAVAD
>Mature_90_residues
TKSELIKTVAKQASLTEAQTNEAVKALTDVITAALAKGEKVQLPGLFTAETVERPARNGRNPRTGESMTIPAHKAVKISA
SSTLKKAVAD

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=40.4494382022472, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR010992 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 9588; Mature: 9457

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELIKTVAKQASLTEAQTNEAVKALTDVITAALAKGEKVQLPGLFTAETVERPARNG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHCC
RNPRTGESMTIPAHKAVKISASSTLKKAVAD
CCCCCCCCEECCCCCEEEECHHHHHHHHHCC
>Mature Secondary Structure 
TKSELIKTVAKQASLTEAQTNEAVKALTDVITAALAKGEKVQLPGLFTAETVERPARNG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHCC
RNPRTGESMTIPAHKAVKISASSTLKKAVAD
CCCCCCCCEECCCCCEEEECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12381787; 2116910 [H]