Click here to switch to the map view.

The map label for this gene is ybbK [C]

Identifier: 50843006

GI number: 50843006

Start: 1649799

End: 1650767

Strand: Reverse

Name: ybbK [C]

Synonym: PPA1528

Alternate gene names: 50843006

Gene position: 1650767-1649799 (Counterclockwise)

Preceding gene: 50843007

Following gene: 50843004

Centisome position: 64.48

GC content: 61.92

Gene sequence:

>969_bases
TTGTCCCTTATCCCACCGCAGGGGGTCATCACCGAGGACAACCTCATGGTCAACATTGACTCGGTGATCTATTTCCAGAT
CGTCGATCCGGAGCGCGCCGCCTACGAGGCGCAGTCTTACAAGACCGCTATCGAGCAACTGACGATGACGACCTTGCGTA
ACATCATCGGTGGTATGGACATGGAGGCGGCCCTCACCAGCCGAGAAGAGATCAACCAGAAGCTACGGTCAGTCCTTGAC
GAGGCCACTGGCAAATGGGGTATCAAAGTCAACCGGGTTGAGTTGCGGGCCATTGAGCCGCCGCCCACGATTCGTGATGC
GATGGAGAAGGGTGCCCGGGCCGAGCGCGACAAGCGAGCCGCGATTCTGTTGGCAGAAGGTCAGCGTCAGTCCCAGGTCC
TGTCGGCCGGCGGCGACCGCGAGTCGGCTATCCTGCGTGCCCAAGGCGACCGTGAGGCTGCCGTCTTGCGTGCCCAGGCC
GATCGTCAGGCCCAGATGCTGCGCGCCGAGGGTGAGGCCCAGGCAATCACGACGGTGTTCAATGCCATCCATGCCGGTCA
GCCCGACCAGGGTCTGCTGGCCTACCAGTACATGCAGATGCTGCCGACCCTTGCTCGTGGCGACTCCAACAAGGTGTGGG
TGGTCCCCTCTGAGCTGAACGACGCCTTGAAGGGTATTGGCTCCTTAGCGGGCAAGGACGAACACGAGCCGGGTAAGGGC
GGTTTTGCGGCGGCTGATCCGTCGCAGTTTGCCGCACCGGAGAAGATTGATGTTTTTGCCGAGATCGAGGCTCAGAAGGC
GGAGGAAAAGGAGGCCTCTGAGGCGACCGTCCAGCAGGCGATCCAAGAGGCTGCCAAGTTGGAGAATCCCGGTCTGTCAG
GCAAACGCAGTATGGGCGGTGGCCAGATCACCCCGGCTCCGGCGGAGCAGCAGACCATCTCGGAACAGGGGAGCGGCCAA
GTCGAGTGA

Upstream 100 bases:

>100_bases
GAGCGGCTCGGAAAGTTCAATCGGCGTCTTAACCCTGGCCCCCATCTGCTTATTCCGATCATCGATCGAGTGCAGCATAA
CCTCGACATGCGTGAGCAGG

Downstream 100 bases:

>100_bases
CCGGCGGCTGCCGAGGCACCCATGCGGGACTCGGAACGGGACATCTCGTATCGTTGGCACCGTGCATGATTTCTTGCATG
ATGATCGTGCAAGAAATCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MSLIPPQGVITEDNLMVNIDSVIYFQIVDPERAAYEAQSYKTAIEQLTMTTLRNIIGGMDMEAALTSREEINQKLRSVLD
EATGKWGIKVNRVELRAIEPPPTIRDAMEKGARAERDKRAAILLAEGQRQSQVLSAGGDRESAILRAQGDREAAVLRAQA
DRQAQMLRAEGEAQAITTVFNAIHAGQPDQGLLAYQYMQMLPTLARGDSNKVWVVPSELNDALKGIGSLAGKDEHEPGKG
GFAAADPSQFAAPEKIDVFAEIEAQKAEEKEASEATVQQAIQEAAKLENPGLSGKRSMGGGQITPAPAEQQTISEQGSGQ
VE

Sequences:

>Translated_322_residues
MSLIPPQGVITEDNLMVNIDSVIYFQIVDPERAAYEAQSYKTAIEQLTMTTLRNIIGGMDMEAALTSREEINQKLRSVLD
EATGKWGIKVNRVELRAIEPPPTIRDAMEKGARAERDKRAAILLAEGQRQSQVLSAGGDRESAILRAQGDREAAVLRAQA
DRQAQMLRAEGEAQAITTVFNAIHAGQPDQGLLAYQYMQMLPTLARGDSNKVWVVPSELNDALKGIGSLAGKDEHEPGKG
GFAAADPSQFAAPEKIDVFAEIEAQKAEEKEASEATVQQAIQEAAKLENPGLSGKRSMGGGQITPAPAEQQTISEQGSGQ
VE
>Mature_321_residues
SLIPPQGVITEDNLMVNIDSVIYFQIVDPERAAYEAQSYKTAIEQLTMTTLRNIIGGMDMEAALTSREEINQKLRSVLDE
ATGKWGIKVNRVELRAIEPPPTIRDAMEKGARAERDKRAAILLAEGQRQSQVLSAGGDRESAILRAQGDREAAVLRAQAD
RQAQMLRAEGEAQAITTVFNAIHAGQPDQGLLAYQYMQMLPTLARGDSNKVWVVPSELNDALKGIGSLAGKDEHEPGKGG
FAAADPSQFAAPEKIDVFAEIEAQKAEEKEASEATVQQAIQEAAKLENPGLSGKRSMGGGQITPAPAEQQTISEQGSGQV
E

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=242, Percent_Identity=31.404958677686, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI38016911, Length=125, Percent_Identity=37.6, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI21686995, Length=125, Percent_Identity=36.8, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI221316744, Length=125, Percent_Identity=36.8, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI1786697, Length=233, Percent_Identity=40.7725321888412, Blast_Score=171, Evalue=7e-44,
Organism=Caenorhabditis elegans, GI32564147, Length=224, Percent_Identity=35.2678571428571, Blast_Score=125, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17569493, Length=125, Percent_Identity=38.4, Blast_Score=95, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI193209764, Length=125, Percent_Identity=38.4, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI71987612, Length=128, Percent_Identity=35.15625, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI25153583, Length=128, Percent_Identity=35.15625, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71987621, Length=128, Percent_Identity=35.15625, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17569499, Length=137, Percent_Identity=35.7664233576642, Blast_Score=81, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI193210507, Length=137, Percent_Identity=37.2262773722628, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17570161, Length=137, Percent_Identity=37.2262773722628, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI32566490, Length=128, Percent_Identity=34.375, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17569497, Length=125, Percent_Identity=30.4, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71989948, Length=105, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71989955, Length=105, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17570459, Length=137, Percent_Identity=32.8467153284672, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI45550506, Length=222, Percent_Identity=33.7837837837838, Blast_Score=121, Evalue=6e-28,
Organism=Drosophila melanogaster, GI45556022, Length=128, Percent_Identity=39.0625, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI18860517, Length=128, Percent_Identity=38.28125, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI281361635, Length=137, Percent_Identity=30.6569343065693, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI281361633, Length=137, Percent_Identity=30.6569343065693, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI281361631, Length=137, Percent_Identity=30.6569343065693, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI21356845, Length=135, Percent_Identity=30.3703703703704, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI28573263, Length=125, Percent_Identity=32.8, Blast_Score=78, Evalue=9e-15,
Organism=Drosophila melanogaster, GI281365664, Length=128, Percent_Identity=34.375, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24657857, Length=128, Percent_Identity=34.375, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI62484448, Length=128, Percent_Identity=34.375, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI62484274, Length=128, Percent_Identity=34.375, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 34719; Mature: 34588

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS01270 BAND_7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIPPQGVITEDNLMVNIDSVIYFQIVDPERAAYEAQSYKTAIEQLTMTTLRNIIGGMD
CCCCCCCCEEECCCEEEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
MEAALTSREEINQKLRSVLDEATGKWGIKVNRVELRAIEPPPTIRDAMEKGARAERDKRA
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCE
AILLAEGQRQSQVLSAGGDRESAILRAQGDREAAVLRAQADRQAQMLRAEGEAQAITTVF
EEEEECCCHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
NAIHAGQPDQGLLAYQYMQMLPTLARGDSNKVWVVPSELNDALKGIGSLAGKDEHEPGKG
HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCC
GFAAADPSQFAAPEKIDVFAEIEAQKAEEKEASEATVQQAIQEAAKLENPGLSGKRSMGG
CCCCCCCHHCCCCCCEEHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
GQITPAPAEQQTISEQGSGQVE
CCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLIPPQGVITEDNLMVNIDSVIYFQIVDPERAAYEAQSYKTAIEQLTMTTLRNIIGGMD
CCCCCCCEEECCCEEEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
MEAALTSREEINQKLRSVLDEATGKWGIKVNRVELRAIEPPPTIRDAMEKGARAERDKRA
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCE
AILLAEGQRQSQVLSAGGDRESAILRAQGDREAAVLRAQADRQAQMLRAEGEAQAITTVF
EEEEECCCHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
NAIHAGQPDQGLLAYQYMQMLPTLARGDSNKVWVVPSELNDALKGIGSLAGKDEHEPGKG
HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCC
GFAAADPSQFAAPEKIDVFAEIEAQKAEEKEASEATVQQAIQEAAKLENPGLSGKRSMGG
CCCCCCCHHCCCCCCEEHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
GQITPAPAEQQTISEQGSGQVE
CCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]