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The map label for this gene is rbfA

Identifier: 50842967

GI number: 50842967

Start: 1606027

End: 1606458

Strand: Reverse

Name: rbfA

Synonym: PPA1489

Alternate gene names: 50842967

Gene position: 1606458-1606027 (Counterclockwise)

Preceding gene: 50842968

Following gene: 50842959

Centisome position: 62.75

GC content: 62.27

Gene sequence:

>432_bases
ATGAACACACCGAATCCGCGTGTCGCCAAGTTAGCCGATCAGATCCGAGTCGTGGTGGCCGAGACCCTTGAGCGTCGTGT
TAAGGATCCCCGCCTGGGCTTCGTGACGATCACCGATGTGCGTCTGACCGGGGACTCCCGTGACGCCACTTTGTTCTGGA
CCGCGATGGGTACCGACAAGGAGATCGCCGGAACGGAAGCGGCACTTGAGTCGGCGAAGGGGATGCTGCGTTCCACCGTC
GGCAAGAGACTCAAGCTGCGCTACGCCCCGACCCTGACCTTCGTGCGTGATGCCACTCCTGAGACCGCCAAGTCGATCGA
GGACGCCTTGGCACGAGCTGCCGCTTCTGATGCCGAGATCGCTCGACGCTCCCAAGGTGCTATGCCTGCCGGTGAGGCTG
ATCCCTACCGTCATAGCGACGAGGAGGAGTGA

Upstream 100 bases:

>100_bases
CCCCCGGACCCCCGCGTTGACACTGGCTGCCGCGTGCGTCGGTGGGGACGGTGTGCAAAAATGGTTGATCCGCTCAGGAC
ACCGATGGCGAGGAGAGATC

Downstream 100 bases:

>100_bases
TAACTCCTGACGACATGGCGTGGCCCCGGACATGAGTCCGAGGTCAGCGTTGTGCCGGAGCAATTAGGTCCACAGTCCGT
CCGGGGCGAACACCTCCTCG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MNTPNPRVAKLADQIRVVVAETLERRVKDPRLGFVTITDVRLTGDSRDATLFWTAMGTDKEIAGTEAALESAKGMLRSTV
GKRLKLRYAPTLTFVRDATPETAKSIEDALARAAASDAEIARRSQGAMPAGEADPYRHSDEEE

Sequences:

>Translated_143_residues
MNTPNPRVAKLADQIRVVVAETLERRVKDPRLGFVTITDVRLTGDSRDATLFWTAMGTDKEIAGTEAALESAKGMLRSTV
GKRLKLRYAPTLTFVRDATPETAKSIEDALARAAASDAEIARRSQGAMPAGEADPYRHSDEEE
>Mature_143_residues
MNTPNPRVAKLADQIRVVVAETLERRVKDPRLGFVTITDVRLTGDSRDATLFWTAMGTDKEIAGTEAALESAKGMLRSTV
GKRLKLRYAPTLTFVRDATPETAKSIEDALARAAASDAEIARRSQGAMPAGEADPYRHSDEEE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_PROAC (Q6A7M9)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_056194.1
- ProteinModelPortal:   Q6A7M9
- SMR:   Q6A7M9
- GeneID:   2932040
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA1489
- NMPDR:   fig|267747.1.peg.1471
- HOGENOM:   HBG751055
- OMA:   TGDLHDA
- ProtClustDB:   PRK00521
- BioCyc:   PACN267747:PPA1489-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 15602; Mature: 15602

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPNPRVAKLADQIRVVVAETLERRVKDPRLGFVTITDVRLTGDSRDATLFWTAMGTDK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCC
EIAGTEAALESAKGMLRSTVGKRLKLRYAPTLTFVRDATPETAKSIEDALARAAASDAEI
CHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCHHHH
ARRSQGAMPAGEADPYRHSDEEE
HHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNTPNPRVAKLADQIRVVVAETLERRVKDPRLGFVTITDVRLTGDSRDATLFWTAMGTDK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCC
EIAGTEAALESAKGMLRSTVGKRLKLRYAPTLTFVRDATPETAKSIEDALARAAASDAEI
CHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCHHHHHHHHHHHHHHCCHHHH
ARRSQGAMPAGEADPYRHSDEEE
HHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA