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The map label for this gene is yifB [C]

Identifier: 50842910

GI number: 50842910

Start: 1548818

End: 1550290

Strand: Reverse

Name: yifB [C]

Synonym: PPA1430

Alternate gene names: 50842910

Gene position: 1550290-1548818 (Counterclockwise)

Preceding gene: 50842911

Following gene: 50842909

Centisome position: 60.55

GC content: 63.07

Gene sequence:

>1473_bases
ATGGTTGAGGTGGAAGCCGCAATTTCGTCCGGACTGCCGCGTACCGTGCTTGTCGGTCTGCCAGACGCGGCCCTCCACGA
GGCCCGGGACCGATGTCGGGCCGCTGTCTGCGCGACGGGGTTGTCGTGGCCTAGCAATGTGTTGACGATCAATCTCACGC
CAGCTGGCCTACCAAAGGCTGGGACGCATTTTGATCTGGCCATTGCTGCAGCGACGCTGGCTGCTGATGGAAAGGTCCCA
CAGGCTCTCTTGGGATCGACGGTTCTGATTGGAGAACTTGGGCTGGACGGCCGAGTACGGCCTGTGCGCGGCGTGCTGCC
CGCGCTGCTAGCGGCGCGGGAGGCTGGGTTTGAGCGGGCGGTAGTACCGGCTAGTCAGAGTGATGAGGCCAGTCTCGTCG
AGGGATTGACGATCTGGCCAGTCGGCCATCTGGGTGACGTTGTCGACGTGTTACATGGTCGTCCAGTGGTGCCTCCTGAG
GGCCCCATTGTGGGGTCTCCCGACACCGATCCGGGGATAGGAGACCTAACGGAGGTTATCGGCCAGCACGAGGCGCGCCG
AGCCCTTGAAGTAGCGGCAGCGGGGCGTCACCACATTCTGCTACGTGGCGCTCCTGGTTGTGGGAAATCTATGTTGGCAC
GACGGTTACCTGGGATTCTTCCCCGACTTGATCACCGTGACGCCCTCGAAGTCACCGCACTGCATTCCTTGGCCGGACGA
GGGAGCGGGCGTCTCATGACGAGGCCCCCACTGGCTCAACCCCATCATTCGGTGTCGATGGCGGCCATGGTCGGTGGGGG
AGTACGTATTGCCCAACCCGGCGCGATCTCGCTAGCGCATCGAGGGGTGTTGTTTCTCGACGAGGCTCCGGAGTTTGCGC
CAAAGGTGTTGGACTCGCTGCGTGGACCGCTGGAGACGGGGGAAATCGTTATTGGACGTTCTCAGGCACACACGACGTTC
CCGGCTCGGTTTCAGCTTGTTATGGCGCTCAATCCGTGCCCGTGTGGGCTGGCCGATGACCCATCGGGACGGTGCACGTG
CACTCCGCAACAGGTTCGCCGGTATTCAGGTCGGCTTTCGGGCCCGATCCTAGACAGAGTGGACGTCACAGTCAGGATGC
GACCGCTGACGTCGGCGCATCTGCTTGATGCGTCAGCTCTGCCCGCGGGGGAATCTAGTGCAGCGGTGCACGAGCGGGTC
GCGCAAGCCCGTGAGCGTGCTGCCGCCCGGTGGCGGGGAGTTCCCTGGCGATGCAACGCCGAGGTTCCAGGAAAAGTCTT
ACGGCAGATGTTGCCGGCCAATGACGCCACTCGAATCATCGAAGATGCTCTGACAACCGGACGGCTCACGGCGCGAGGCG
TCGACAAAGTGCTGCGAATCGCGTGGACGGTGGCCGACCTCGAGGGCAAGGACGAGGTTGACAAAGCGTGTGTGGCGGAG
GCCATGGGAATGCGACGAGGGAGATTGCGATGA

Upstream 100 bases:

>100_bases
TGGTGCGCCCGGGCGCCGAGCCAACTGTCACACATGTGCGAGGTATCCGGTGACCGGCGCAAGTGCGTGGTCGGTCGCGT
TGGTAGGGATGGAAGGCTCC

Downstream 100 bases:

>100_bases
CGTGGACGAGCGAGAGATTGGCGCGGGCCGCTCTGACAGCTGCTGCCGAGCCGGGGGTGATGGCGAAACGACTAGTTGAG
ATGACCGCTGAAGAGCTGTG

Product: competence related protein (magnesium chelatase, ATPase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 490

Protein sequence:

>490_residues
MVEVEAAISSGLPRTVLVGLPDAALHEARDRCRAAVCATGLSWPSNVLTINLTPAGLPKAGTHFDLAIAAATLAADGKVP
QALLGSTVLIGELGLDGRVRPVRGVLPALLAAREAGFERAVVPASQSDEASLVEGLTIWPVGHLGDVVDVLHGRPVVPPE
GPIVGSPDTDPGIGDLTEVIGQHEARRALEVAAAGRHHILLRGAPGCGKSMLARRLPGILPRLDHRDALEVTALHSLAGR
GSGRLMTRPPLAQPHHSVSMAAMVGGGVRIAQPGAISLAHRGVLFLDEAPEFAPKVLDSLRGPLETGEIVIGRSQAHTTF
PARFQLVMALNPCPCGLADDPSGRCTCTPQQVRRYSGRLSGPILDRVDVTVRMRPLTSAHLLDASALPAGESSAAVHERV
AQARERAAARWRGVPWRCNAEVPGKVLRQMLPANDATRIIEDALTTGRLTARGVDKVLRIAWTVADLEGKDEVDKACVAE
AMGMRRGRLR

Sequences:

>Translated_490_residues
MVEVEAAISSGLPRTVLVGLPDAALHEARDRCRAAVCATGLSWPSNVLTINLTPAGLPKAGTHFDLAIAAATLAADGKVP
QALLGSTVLIGELGLDGRVRPVRGVLPALLAAREAGFERAVVPASQSDEASLVEGLTIWPVGHLGDVVDVLHGRPVVPPE
GPIVGSPDTDPGIGDLTEVIGQHEARRALEVAAAGRHHILLRGAPGCGKSMLARRLPGILPRLDHRDALEVTALHSLAGR
GSGRLMTRPPLAQPHHSVSMAAMVGGGVRIAQPGAISLAHRGVLFLDEAPEFAPKVLDSLRGPLETGEIVIGRSQAHTTF
PARFQLVMALNPCPCGLADDPSGRCTCTPQQVRRYSGRLSGPILDRVDVTVRMRPLTSAHLLDASALPAGESSAAVHERV
AQARERAAARWRGVPWRCNAEVPGKVLRQMLPANDATRIIEDALTTGRLTARGVDKVLRIAWTVADLEGKDEVDKACVAE
AMGMRRGRLR
>Mature_490_residues
MVEVEAAISSGLPRTVLVGLPDAALHEARDRCRAAVCATGLSWPSNVLTINLTPAGLPKAGTHFDLAIAAATLAADGKVP
QALLGSTVLIGELGLDGRVRPVRGVLPALLAAREAGFERAVVPASQSDEASLVEGLTIWPVGHLGDVVDVLHGRPVVPPE
GPIVGSPDTDPGIGDLTEVIGQHEARRALEVAAAGRHHILLRGAPGCGKSMLARRLPGILPRLDHRDALEVTALHSLAGR
GSGRLMTRPPLAQPHHSVSMAAMVGGGVRIAQPGAISLAHRGVLFLDEAPEFAPKVLDSLRGPLETGEIVIGRSQAHTTF
PARFQLVMALNPCPCGLADDPSGRCTCTPQQVRRYSGRLSGPILDRVDVTVRMRPLTSAHLLDASALPAGESSAAVHERV
AQARERAAARWRGVPWRCNAEVPGKVLRQMLPANDATRIIEDALTTGRLTARGVDKVLRIAWTVADLEGKDEVDKACVAE
AMGMRRGRLR

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=487, Percent_Identity=41.8891170431211, Blast_Score=325, Evalue=3e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C; PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 51631; Mature: 51631

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEVEAAISSGLPRTVLVGLPDAALHEARDRCRAAVCATGLSWPSNVLTINLTPAGLPKA
CEEEHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
GTHFDLAIAAATLAADGKVPQALLGSTVLIGELGLDGRVRPVRGVLPALLAAREAGFERA
CCCHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEE
VVPASQSDEASLVEGLTIWPVGHLGDVVDVLHGRPVVPPEGPIVGSPDTDPGIGDLTEVI
ECCCCCCCCHHHHCCCEEEECHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCHHHHHHHH
GQHEARRALEVAAAGRHHILLRGAPGCGKSMLARRLPGILPRLDHRDALEVTALHSLAGR
HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
GSGRLMTRPPLAQPHHSVSMAAMVGGGVRIAQPGAISLAHRGVLFLDEAPEFAPKVLDSL
CCCCEEECCCCCCCCCCCEEHHHCCCCEEEECCCCEEHHCCCEEEECCCCHHHHHHHHHH
RGPLETGEIVIGRSQAHTTFPARFQLVMALNPCPCGLADDPSGRCTCTPQQVRRYSGRLS
CCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEECHHHHHHHCCCCC
GPILDRVDVTVRMRPLTSAHLLDASALPAGESSAAVHERVAQARERAAARWRGVPWRCNA
CCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECC
EVPGKVLRQMLPANDATRIIEDALTTGRLTARGVDKVLRIAWTVADLEGKDEVDKACVAE
CCCHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
AMGMRRGRLR
HHHHHCCCCC
>Mature Secondary Structure
MVEVEAAISSGLPRTVLVGLPDAALHEARDRCRAAVCATGLSWPSNVLTINLTPAGLPKA
CEEEHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
GTHFDLAIAAATLAADGKVPQALLGSTVLIGELGLDGRVRPVRGVLPALLAAREAGFERA
CCCHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEE
VVPASQSDEASLVEGLTIWPVGHLGDVVDVLHGRPVVPPEGPIVGSPDTDPGIGDLTEVI
ECCCCCCCCHHHHCCCEEEECHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCHHHHHHHH
GQHEARRALEVAAAGRHHILLRGAPGCGKSMLARRLPGILPRLDHRDALEVTALHSLAGR
HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC
GSGRLMTRPPLAQPHHSVSMAAMVGGGVRIAQPGAISLAHRGVLFLDEAPEFAPKVLDSL
CCCCEEECCCCCCCCCCCEEHHHCCCCEEEECCCCEEHHCCCEEEECCCCHHHHHHHHHH
RGPLETGEIVIGRSQAHTTFPARFQLVMALNPCPCGLADDPSGRCTCTPQQVRRYSGRLS
CCCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEECHHHHHHHCCCCC
GPILDRVDVTVRMRPLTSAHLLDASALPAGESSAAVHERVAQARERAAARWRGVPWRCNA
CCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECC
EVPGKVLRQMLPANDATRIIEDALTTGRLTARGVDKVLRIAWTVADLEGKDEVDKACVAE
CCCHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
AMGMRRGRLR
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]