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The map label for this gene is nagD [H]

Identifier: 50842883

GI number: 50842883

Start: 1517562

End: 1518560

Strand: Reverse

Name: nagD [H]

Synonym: PPA1401

Alternate gene names: 50842883

Gene position: 1518560-1517562 (Counterclockwise)

Preceding gene: 50842884

Following gene: 50842882

Centisome position: 59.31

GC content: 59.86

Gene sequence:

>999_bases
GTGAGCGATGCCCTCATTGATGAACATGACGCTGCCCTCTTTGACTTAGATGGAGTGGTCTACCTGGGGCCGGACCCGGT
TCCTGCAGCACCTGACACCATTGCCGAATTACGGCGTCGCGGGGTCAAGGTCGGCTTCGTCACCAATAATGCCGCTCGTT
CGGCTGAGGTTGTAGCTCAACACCTGACCGACATCGGTATCCCGACCGAGCCTAGCGACGTCGTCACCTCAGGACAGGCG
ATTTCTGATCTCGCTGCCGATACATTGCCTGCTGGCGCCAGGGTGCTCATCGTCGGGACGGAATCGTTACGCGATGACGC
GCGGGCACGCGGGTTGCAGCCGGTCGAGTCCGCTAGGGATGATCCTGTCGCCGTCATCCAGGGGTACGACTCACAGATTG
CCTGGCCATTGCTCGAGGAGGCAGGATTCGCCTTGCAGGCGGGCGCGATGTGGTATGCCGCTAATCCAGACATCACTCGT
CCAACGGATCGCGGCATTGTCCCGGGGATAGGTGCTCAGCTCCAAGTCGTCGCTACTACGTGCAATGCCGAGCCAGTTAT
CGCCGGAAAGCCCTACCGCCCGTTGCTGGAGGCCACCATTTCCCGATTAAGGTCTACCTCACCAATCTTTGTTGGGGACC
GTTTAGACACCGACATTCGTGGCGCAAACACGATGGATGTTGACTCGCTATTCGTCTTTACCGGTTCTCACGGTGTCGCT
GACGTGCTAGCTGCTGCTCCTGAGGATCGGCCGCAGAATATTGCTGCCGATCTGTCCGGGTTGCTTGAGCCCAAGCGCGA
GGTCGATGTGTCCGGCGACCGCGCGCGTTGCGGTGGGAGCATAGTGTCGGTGCACGCTGACCGAGAGGTCCGTGCGGAGA
GTACTCCCGATGATATTTGCGGGCAGCTCGATGCCGTGGCCGCCATGATGGCCCTTGTCTATGGGTCGAATGTGACTATT
CCCGACGATGCCGGGAGGCTCTTCGACAAGCTTCACTGA

Upstream 100 bases:

>100_bases
AGGACCGCATTGACATCATTGATGGTCGAGAGCCAAGCGGGGACCCTGCTGACGACATGCTCTTCATCGAAGACGACAAT
GAGGGCGAGGAGACAGACCA

Downstream 100 bases:

>100_bases
ACGGTGTTCAATTGGTCCCAACGGCTGCCCATGTGGTCAGCCGCTCTATCTCGTCATGGGAAGGAACCCGATGTCGTCAC
GCAATGGTTTCCAGGCCACC

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSDALIDEHDAALFDLDGVVYLGPDPVPAAPDTIAELRRRGVKVGFVTNNAARSAEVVAQHLTDIGIPTEPSDVVTSGQA
ISDLAADTLPAGARVLIVGTESLRDDARARGLQPVESARDDPVAVIQGYDSQIAWPLLEEAGFALQAGAMWYAANPDITR
PTDRGIVPGIGAQLQVVATTCNAEPVIAGKPYRPLLEATISRLRSTSPIFVGDRLDTDIRGANTMDVDSLFVFTGSHGVA
DVLAAAPEDRPQNIAADLSGLLEPKREVDVSGDRARCGGSIVSVHADREVRAESTPDDICGQLDAVAAMMALVYGSNVTI
PDDAGRLFDKLH

Sequences:

>Translated_332_residues
MSDALIDEHDAALFDLDGVVYLGPDPVPAAPDTIAELRRRGVKVGFVTNNAARSAEVVAQHLTDIGIPTEPSDVVTSGQA
ISDLAADTLPAGARVLIVGTESLRDDARARGLQPVESARDDPVAVIQGYDSQIAWPLLEEAGFALQAGAMWYAANPDITR
PTDRGIVPGIGAQLQVVATTCNAEPVIAGKPYRPLLEATISRLRSTSPIFVGDRLDTDIRGANTMDVDSLFVFTGSHGVA
DVLAAAPEDRPQNIAADLSGLLEPKREVDVSGDRARCGGSIVSVHADREVRAESTPDDICGQLDAVAAMMALVYGSNVTI
PDDAGRLFDKLH
>Mature_331_residues
SDALIDEHDAALFDLDGVVYLGPDPVPAAPDTIAELRRRGVKVGFVTNNAARSAEVVAQHLTDIGIPTEPSDVVTSGQAI
SDLAADTLPAGARVLIVGTESLRDDARARGLQPVESARDDPVAVIQGYDSQIAWPLLEEAGFALQAGAMWYAANPDITRP
TDRGIVPGIGAQLQVVATTCNAEPVIAGKPYRPLLEATISRLRSTSPIFVGDRLDTDIRGANTMDVDSLFVFTGSHGVAD
VLAAAPEDRPQNIAADLSGLLEPKREVDVSGDRARCGGSIVSVHADREVRAESTPDDICGQLDAVAAMMALVYGSNVTIP
DDAGRLFDKLH

Specific function: Unknown

COG id: COG0647

COG function: function code G; Predicted sugar phosphatases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. NagD family [H]

Homologues:

Organism=Homo sapiens, GI108796653, Length=277, Percent_Identity=27.7978339350181, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI10092677, Length=239, Percent_Identity=30.5439330543933, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI1786890, Length=230, Percent_Identity=23.9130434782609, Blast_Score=71, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI193210059, Length=274, Percent_Identity=28.4671532846715, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17560956, Length=290, Percent_Identity=24.4827586206897, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17562458, Length=292, Percent_Identity=23.2876712328767, Blast_Score=91, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17558880, Length=292, Percent_Identity=23.2876712328767, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI86563050, Length=252, Percent_Identity=28.968253968254, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562356, Length=243, Percent_Identity=27.1604938271605, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6319965, Length=246, Percent_Identity=26.4227642276423, Blast_Score=97, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24666141, Length=266, Percent_Identity=22.5563909774436, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI18859765, Length=273, Percent_Identity=23.0769230769231, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006357
- InterPro:   IPR006354
- InterPro:   IPR023215 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 34950; Mature: 34818

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDALIDEHDAALFDLDGVVYLGPDPVPAAPDTIAELRRRGVKVGFVTNNAARSAEVVAQ
CCCCCCCCCCCEEEECCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHH
HLTDIGIPTEPSDVVTSGQAISDLAADTLPAGARVLIVGTESLRDDARARGLQPVESARD
HHHHCCCCCCCHHHHHCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHCCCCCHHHCCC
DPVAVIQGYDSQIAWPLLEEAGFALQAGAMWYAANPDITRPTDRGIVPGIGAQLQVVATT
CCEEEEECCCCCCCHHHHHHCCCEEECCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE
CNAEPVIAGKPYRPLLEATISRLRSTSPIFVGDRLDTDIRGANTMDVDSLFVFTGSHGVA
CCCCEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCHH
DVLAAAPEDRPQNIAADLSGLLEPKREVDVSGDRARCGGSIVSVHADREVRAESTPDDIC
HHHHCCCCCCCHHHHHHHHHHCCCCHHCCCCCCHHHCCCCEEEEECCCCCCCCCCCHHHH
GQLDAVAAMMALVYGSNVTIPDDAGRLFDKLH
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
SDALIDEHDAALFDLDGVVYLGPDPVPAAPDTIAELRRRGVKVGFVTNNAARSAEVVAQ
CCCCCCCCCCEEEECCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHH
HLTDIGIPTEPSDVVTSGQAISDLAADTLPAGARVLIVGTESLRDDARARGLQPVESARD
HHHHCCCCCCCHHHHHCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHCCCCCHHHCCC
DPVAVIQGYDSQIAWPLLEEAGFALQAGAMWYAANPDITRPTDRGIVPGIGAQLQVVATT
CCEEEEECCCCCCCHHHHHHCCCEEECCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE
CNAEPVIAGKPYRPLLEATISRLRSTSPIFVGDRLDTDIRGANTMDVDSLFVFTGSHGVA
CCCCEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCEEEEEECCCCHH
DVLAAAPEDRPQNIAADLSGLLEPKREVDVSGDRARCGGSIVSVHADREVRAESTPDDIC
HHHHCCCCCCCHHHHHHHHHHCCCCHHCCCCCCHHHCCCCEEEEECCCCCCCCCCCHHHH
GQLDAVAAMMALVYGSNVTIPDDAGRLFDKLH
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA