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The map label for this gene is smpB

Identifier: 50842835

GI number: 50842835

Start: 1474828

End: 1475310

Strand: Reverse

Name: smpB

Synonym: PPA1351

Alternate gene names: 50842835

Gene position: 1475310-1474828 (Counterclockwise)

Preceding gene: 50842836

Following gene: 50842834

Centisome position: 57.62

GC content: 60.46

Gene sequence:

>483_bases
ATGCCCAGGGAGCAGGGGGTCAGGGTCGTCGCGCGTAACCGACGCGCCACCCATGACTACACCATCGGTGACACATGGGA
GGCCGGGCTCGTTCTGCAGGGAACCGAGGTGAAGTCCCTGCGGGCTGGCAAGGCCACGTTGACTGATGCTTTCGCTCAGG
TCGATGAACGCGGTGAGGTGTGGATGTATAACCTCCATATCCCCGAATATGCCTTCGGAACATGGCGAAATCACGACGTG
ATGCGCAAGCGCAAACTCTTGCTCAATAAGCGTGAGATCGCCAAGCTGTCCCGCGAGGCGGACGGCCCGGGCAAAACGAT
CGTTCCGTTGCAGCTCTACTTCAAGGACGGCTACGCCAAGGTCGAGATTGCCGTTGGCACCGGTAAGAGGGACTGGGATA
AGCGCCAGGCGATCCGCGAACGCGATGCCAAGCGTGAAGCTCAGCGAGCTCTGGCAAATCGGGTGCGCAACCGCAAACGC
TGA

Upstream 100 bases:

>100_bases
CGTGCTATCTGTGGCGCCAGCCTACGTTGCAACAAAGAAGTACCTTAGAGTCTAATTTCTTCGTATAGGATGAAAGATCC
TGTGTCGAAGGAGGTTTGTC

Downstream 100 bases:

>100_bases
ATCTTTGATGGCCGCCGTCGCACGTATAGGTGCGGGGTGGCCGTTCTCGATCACATTGTGAGTCGGGGTTGGTCTCGTGG
GCGATCGAGTGTATAAATAT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MPREQGVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNLHIPEYAFGTWRNHDV
MRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKDGYAKVEIAVGTGKRDWDKRQAIRERDAKREAQRALANRVRNRKR

Sequences:

>Translated_160_residues
MPREQGVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNLHIPEYAFGTWRNHDV
MRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKDGYAKVEIAVGTGKRDWDKRQAIRERDAKREAQRALANRVRNRKR
>Mature_159_residues
PREQGVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNLHIPEYAFGTWRNHDVM
RKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKDGYAKVEIAVGTGKRDWDKRQAIRERDAKREAQRALANRVRNRKR

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=149, Percent_Identity=42.2818791946309, Blast_Score=108, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_PROAC (Q6A811)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_056062.1
- ProteinModelPortal:   Q6A811
- SMR:   Q6A811
- GeneID:   2932672
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA1351
- NMPDR:   fig|267747.1.peg.1339
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   PACN267747:PPA1351-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18544; Mature: 18413

Theoretical pI: Translated: 10.99; Mature: 10.99

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPREQGVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEV
CCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCCHHHCCCHHHHHHHHHHCCCCCE
WMYNLHIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKDGYAK
EEEEECCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCEEEEEEEEEECCCEE
VEIAVGTGKRDWDKRQAIRERDAKREAQRALANRVRNRKR
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PREQGVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEV
CCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCCHHHCCCHHHHHHHHHHCCCCCE
WMYNLHIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKDGYAK
EEEEECCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCEEEEEEEEEECCCEE
VEIAVGTGKRDWDKRQAIRERDAKREAQRALANRVRNRKR
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA