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The map label for this gene is ycaJ [C]

Identifier: 50842656

GI number: 50842656

Start: 1282092

End: 1283477

Strand: Direct

Name: ycaJ [C]

Synonym: PPA1176

Alternate gene names: 50842656

Gene position: 1282092-1283477 (Clockwise)

Preceding gene: 50842655

Following gene: 50842657

Centisome position: 50.08

GC content: 62.19

Gene sequence:

>1386_bases
GTGAGTGAGGATCTCTTCGGCAACGTCACGTCGGCTCAATCCGACGCGACCAGTGGTGGGTCCCTGGATACTCCCAACCC
TGACGCGCCACTAGCAGTTCGGCTTCGCCCGCGCACCATTGATGAGATCGTCGGGCAGCAGCATTTGCTGACCCCCGGTT
CACCCCTGCGCCGCCTGGCCGAGGGGACCGGGGCCATGAGCGTGTTCTTGTGGGGCCCTCCCGGGGTTGGTAAGACGACG
ATTGCCTCGGTCGTCTCCCACGCCACGAACCGACGCTTCGTGGAGATCTCGGCTGTAACGGCCGGAGTCAAAGACATCCG
TCGGGAACTTGACACTGCCCGACGTCAGTTAGCCTTAGGACAGCCGACCGTTCTCTTCGTCGACGAGGTGCACCGCTTCT
CTAAGGCCCAGCAGGACGTCCTGCTCCCGGCAGTGGAGAACCGCACCGTGACCCTCATCGCGGCGACCACCGAAAACCCG
TCTTTTTCGGTCATCTCCCCGCTGTTGTCGCGCTCCTTATTGTTGACCCTCAAGCCACTCACCGAGGCTGACGTTTCATC
GTTACTCGATCGAGCCCTGAGCGATCCACGCGGCCTGCGAACTGAGTCCGACAGGCGTTACGTCCTGGAGGACGATGCTC
GCGCTGACCTGCTGCAACTGGCTGCGGGAGACGCACGACGCGCCCTCACCTATCTTGAAGAGGCCGCTGCCGGGGCGAGT
GCGGCAGGTACTGACACGATCACGAGTCAGATCGTCTCCACTGCGGTTGATCGTGCCGCAGTGCGCTACGACCGTGACGG
CGACCAGCACTACGATGTCATCAGCGCTTTCATCAAATCCGTGCGCGGCTCAGACGTTGACGCCGCACTGCACTACCTGG
CCCGGATGATTGAGGCAGGGGAGGATCCCCGATTTATTGCACGGCGCCTTATCATTCTCGCCAGTGAAGACATCGGGATG
GCCGCCCCAAGTGTGCTCCAGACCTGTGTCGCGGCAGCCCAGGCCGTCCAACTGATCGGGATGCCCGAGGCTCGTCTCAA
CCTAGCCCAGGCCACCATTGCCGCAGCCACCGCCCCGAAATCCAACGCCGTCATCACCGCTATCGATGGGGCCCTGGCCG
ATGTACGCGCTGGAAAGGGGGGCGAAGTTCCCGCCCACTTGCGTGACGCCCACTACTCATCAGCCCACGATCTGGGCCAC
GGCGTCGGATATCGTTACGCCCACAATTTCCCGCATGGGGTTGCCAAGCAGCAGTATCTGCCCGACGATATCGCCTCGAC
CCGGTATTACGACCCGACCGATCATGGCAATGAGGCTGCTATTGCACAACGTCTGAGCCAGATACGGGCGCTGCTTGGGC
GAGATATTGAGGAGGAGAAGTCATGA

Upstream 100 bases:

>100_bases
CGGTGACGACGGGCGGCGGCGATATCAGTCGCTGCCCGAGCGTTACTGCGCGAACATACGTGAGCGGCTCGCTGTCGCAA
CGCGGCGATATGGTGCCATG

Downstream 100 bases:

>100_bases
CCTTGGGTCAGATAGCCGGACTCATCGCAGCACTCGCGGCGGTAGTGCTGGTCGCGCTATGCGCGGTTCCATTGCTCAAA
CTTGGCGGCGTCCTCGACGA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 460

Protein sequence:

>461_residues
MSEDLFGNVTSAQSDATSGGSLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMSVFLWGPPGVGKTT
IASVVSHATNRRFVEISAVTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENRTVTLIAATTENP
SFSVISPLLSRSLLLTLKPLTEADVSSLLDRALSDPRGLRTESDRRYVLEDDARADLLQLAAGDARRALTYLEEAAAGAS
AAGTDTITSQIVSTAVDRAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMIEAGEDPRFIARRLIILASEDIGM
AAPSVLQTCVAAAQAVQLIGMPEARLNLAQATIAAATAPKSNAVITAIDGALADVRAGKGGEVPAHLRDAHYSSAHDLGH
GVGYRYAHNFPHGVAKQQYLPDDIASTRYYDPTDHGNEAAIAQRLSQIRALLGRDIEEEKS

Sequences:

>Translated_461_residues
MSEDLFGNVTSAQSDATSGGSLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMSVFLWGPPGVGKTT
IASVVSHATNRRFVEISAVTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENRTVTLIAATTENP
SFSVISPLLSRSLLLTLKPLTEADVSSLLDRALSDPRGLRTESDRRYVLEDDARADLLQLAAGDARRALTYLEEAAAGAS
AAGTDTITSQIVSTAVDRAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMIEAGEDPRFIARRLIILASEDIGM
AAPSVLQTCVAAAQAVQLIGMPEARLNLAQATIAAATAPKSNAVITAIDGALADVRAGKGGEVPAHLRDAHYSSAHDLGH
GVGYRYAHNFPHGVAKQQYLPDDIASTRYYDPTDHGNEAAIAQRLSQIRALLGRDIEEEKS
>Mature_460_residues
SEDLFGNVTSAQSDATSGGSLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLAEGTGAMSVFLWGPPGVGKTTI
ASVVSHATNRRFVEISAVTAGVKDIRRELDTARRQLALGQPTVLFVDEVHRFSKAQQDVLLPAVENRTVTLIAATTENPS
FSVISPLLSRSLLLTLKPLTEADVSSLLDRALSDPRGLRTESDRRYVLEDDARADLLQLAAGDARRALTYLEEAAAGASA
AGTDTITSQIVSTAVDRAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMIEAGEDPRFIARRLIILASEDIGMA
APSVLQTCVAAAQAVQLIGMPEARLNLAQATIAAATAPKSNAVITAIDGALADVRAGKGGEVPAHLRDAHYSSAHDLGHG
VGYRYAHNFPHGVAKQQYLPDDIASTRYYDPTDHGNEAAIAQRLSQIRALLGRDIEEEKS

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=436, Percent_Identity=39.4495412844037, Blast_Score=281, Evalue=8e-76,
Organism=Homo sapiens, GI18426904, Length=436, Percent_Identity=35.5504587155963, Blast_Score=233, Evalue=3e-61,
Organism=Escherichia coli, GI1787119, Length=435, Percent_Identity=44.5977011494253, Blast_Score=349, Evalue=2e-97,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=37.793427230047, Blast_Score=279, Evalue=6e-76,
Organism=Saccharomyces cerevisiae, GI6322528, Length=292, Percent_Identity=25, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324039, Length=233, Percent_Identity=22.7467811158798, Blast_Score=63, Evalue=8e-11,
Organism=Drosophila melanogaster, GI18859927, Length=244, Percent_Identity=25, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49286; Mature: 49155

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEDLFGNVTSAQSDATSGGSLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCHHHHHHH
EGTGAMSVFLWGPPGVGKTTIASVVSHATNRRFVEISAVTAGVKDIRRELDTARRQLALG
CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCC
QPTVLFVDEVHRFSKAQQDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPL
CCCEEHHHHHHHHHHHHHHHCCEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHEEECCC
TEADVSSLLDRALSDPRGLRTESDRRYVLEDDARADLLQLAAGDARRALTYLEEAAAGAS
CHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHCCCC
AAGTDTITSQIVSTAVDRAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMIEAG
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
EDPRFIARRLIILASEDIGMAAPSVLQTCVAAAQAVQLIGMPEARLNLAQATIAAATAPK
CCHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
SNAVITAIDGALADVRAGKGGEVPAHLRDAHYSSAHDLGHGVGYRYAHNFPHGVAKQQYL
CCCEEEEECCHHHHHCCCCCCCCCHHHHHCCCCHHHHHHCCCCCHHCCCCCCCHHHHHCC
PDDIASTRYYDPTDHGNEAAIAQRLSQIRALLGRDIEEEKS
CCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCC
>Mature Secondary Structure 
SEDLFGNVTSAQSDATSGGSLDTPNPDAPLAVRLRPRTIDEIVGQQHLLTPGSPLRRLA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCCCCCCHHHHHHH
EGTGAMSVFLWGPPGVGKTTIASVVSHATNRRFVEISAVTAGVKDIRRELDTARRQLALG
CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCC
QPTVLFVDEVHRFSKAQQDVLLPAVENRTVTLIAATTENPSFSVISPLLSRSLLLTLKPL
CCCEEHHHHHHHHHHHHHHHCCEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHEEECCC
TEADVSSLLDRALSDPRGLRTESDRRYVLEDDARADLLQLAAGDARRALTYLEEAAAGAS
CHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHCCCC
AAGTDTITSQIVSTAVDRAAVRYDRDGDQHYDVISAFIKSVRGSDVDAALHYLARMIEAG
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
EDPRFIARRLIILASEDIGMAAPSVLQTCVAAAQAVQLIGMPEARLNLAQATIAAATAPK
CCHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
SNAVITAIDGALADVRAGKGGEVPAHLRDAHYSSAHDLGHGVGYRYAHNFPHGVAKQQYL
CCCEEEEECCHHHHHCCCCCCCCCHHHHHCCCCHHHHHHCCCCCHHCCCCCCCHHHHHCC
PDDIASTRYYDPTDHGNEAAIAQRLSQIRALLGRDIEEEKS
CCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]