Click here to switch to the map view.

The map label for this gene is 50842580

Identifier: 50842580

GI number: 50842580

Start: 1193412

End: 1194209

Strand: Direct

Name: 50842580

Synonym: PPA1102

Alternate gene names: NA

Gene position: 1193412-1194209 (Clockwise)

Preceding gene: 50842578

Following gene: 50842583

Centisome position: 46.61

GC content: 58.27

Gene sequence:

>798_bases
TTGTGCCCCACGTGGTGGCCGAGAGAACAATGCCGAGAGACGGACCTTGTGTCAATGAGTTCGAGGGGCGACGAGGTAGA
GTTCCACACCGTGCGTCTCGTCATTGCCCAGTGCCAGGTCGACTATACCGGCCGTCTTACTGCCCATTTGCCGTGGGCTA
AGCGGCTCATCGTCGTCAAATCAGATAATTCGGTAAGCGTTCACGCAGACGACCGGGCGTATAAGCCCCTGAATTGGATG
AGTTCCCCGTGCACATTGACGATTCGTCCTTGCCTGCCCGATGAACCGGCGGCCACCGCCGCTGTCGACGCCGAAGAGGT
TTGGGAAGTTGACGCCCCGACCGGCGACCATCTCCAAATCCTGCTGGGACCGAAGGTGCTCGATGTCACCGAGGAATTGG
GTATTGACCCGGGCCTGCAGAAGGATGGGGTAGAGGCTCATCTCCAGGAATTACTGGCTGAGAATCCTAACACTTTCGGC
GATGGCTGGTCGCTGGTCCGTCGTGAGTACATGACGCCTATCGGTCCGGTTGACCTGCTTTGTCGCGATGCCGACGGGGT
CTATGTCGCTGTCGAAGTCAAGAGGCGCGGTGAGATGGATGGGGTGGAGCAACTTACCCGGTATCTTGAACTGCTCAATA
GAGATCACTTGTTAGGTGATCGCGTGCGCGGGGTTTTCGCCGCCCAAAAGATCAAACCGCAGGCGCGTACCCTAGCCGTT
GATCGCGGGATCGAGTGCGTCACTATCGATTACGACGCTCTGCGTGGCATGGACCATCCGGAGGACCGTCTCTTCTGA

Upstream 100 bases:

>100_bases
CCATCTCTCTTGTGCTCAGGGCGCGGGTGACTAGCCGTATTGAGGGGTCGGGGCGGGCGCTGCCATTTGCGCGAACCATG
ATGACGACCCATGGGTCCCA

Downstream 100 bases:

>100_bases
CGTGCACACGGCTGCGGGGCTTATGACCTCCTGACCAGGGTCCCCGCCGCCGTGTTATCAACGTCACTTCCCAGGCCTAA
TGCCTTGAGGAAGGACCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MCPTWWPREQCRETDLVSMSSRGDEVEFHTVRLVIAQCQVDYTGRLTAHLPWAKRLIVVKSDNSVSVHADDRAYKPLNWM
SSPCTLTIRPCLPDEPAATAAVDAEEVWEVDAPTGDHLQILLGPKVLDVTEELGIDPGLQKDGVEAHLQELLAENPNTFG
DGWSLVRREYMTPIGPVDLLCRDADGVYVAVEVKRRGEMDGVEQLTRYLELLNRDHLLGDRVRGVFAAQKIKPQARTLAV
DRGIECVTIDYDALRGMDHPEDRLF

Sequences:

>Translated_265_residues
MCPTWWPREQCRETDLVSMSSRGDEVEFHTVRLVIAQCQVDYTGRLTAHLPWAKRLIVVKSDNSVSVHADDRAYKPLNWM
SSPCTLTIRPCLPDEPAATAAVDAEEVWEVDAPTGDHLQILLGPKVLDVTEELGIDPGLQKDGVEAHLQELLAENPNTFG
DGWSLVRREYMTPIGPVDLLCRDADGVYVAVEVKRRGEMDGVEQLTRYLELLNRDHLLGDRVRGVFAAQKIKPQARTLAV
DRGIECVTIDYDALRGMDHPEDRLF
>Mature_265_residues
MCPTWWPREQCRETDLVSMSSRGDEVEFHTVRLVIAQCQVDYTGRLTAHLPWAKRLIVVKSDNSVSVHADDRAYKPLNWM
SSPCTLTIRPCLPDEPAATAAVDAEEVWEVDAPTGDHLQILLGPKVLDVTEELGIDPGLQKDGVEAHLQELLAENPNTFG
DGWSLVRREYMTPIGPVDLLCRDADGVYVAVEVKRRGEMDGVEQLTRYLELLNRDHLLGDRVRGVFAAQKIKPQARTLAV
DRGIECVTIDYDALRGMDHPEDRLF

Specific function: Unknown

COG id: COG1637

COG function: function code L; Predicted nuclease of the RecB family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0286 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002793 [H]

Pfam domain/function: PF01939 DUF91 [H]

EC number: NA

Molecular weight: Translated: 29784; Mature: 29784

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCPTWWPREQCRETDLVSMSSRGDEVEFHTVRLVIAQCQVDYTGRLTAHLPWAKRLIVVK
CCCCCCCHHHHCCCCEEEECCCCCCEEHHHEEEEEEHHCCCCCCCEEEECCCCEEEEEEE
SDNSVSVHADDRAYKPLNWMSSPCTLTIRPCLPDEPAATAAVDAEEVWEVDAPTGDHLQI
CCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCHHHHEECCCCCCCCEEE
LLGPKVLDVTEELGIDPGLQKDGVEAHLQELLAENPNTFGDGWSLVRREYMTPIGPVDLL
EECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHE
CRDADGVYVAVEVKRRGEMDGVEQLTRYLELLNRDHLLGDRVRGVFAAQKIKPQARTLAV
EECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHEEHH
DRGIECVTIDYDALRGMDHPEDRLF
HCCCEEEEEEHHHHCCCCCCHHCCC
>Mature Secondary Structure
MCPTWWPREQCRETDLVSMSSRGDEVEFHTVRLVIAQCQVDYTGRLTAHLPWAKRLIVVK
CCCCCCCHHHHCCCCEEEECCCCCCEEHHHEEEEEEHHCCCCCCCEEEECCCCEEEEEEE
SDNSVSVHADDRAYKPLNWMSSPCTLTIRPCLPDEPAATAAVDAEEVWEVDAPTGDHLQI
CCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCHHHHEECCCCCCCCEEE
LLGPKVLDVTEELGIDPGLQKDGVEAHLQELLAENPNTFGDGWSLVRREYMTPIGPVDLL
EECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHE
CRDADGVYVAVEVKRRGEMDGVEQLTRYLELLNRDHLLGDRVRGVFAAQKIKPQARTLAV
EECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHEEHH
DRGIECVTIDYDALRGMDHPEDRLF
HCCCEEEEEEHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA