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The map label for this gene is ybeY [C]

Identifier: 50842421

GI number: 50842421

Start: 1017538

End: 1018005

Strand: Direct

Name: ybeY [C]

Synonym: PPA0937

Alternate gene names: 50842421

Gene position: 1017538-1018005 (Clockwise)

Preceding gene: 50842420

Following gene: 50842422

Centisome position: 39.74

GC content: 58.33

Gene sequence:

>468_bases
ATGATCGACATCACTAATGAGTCTGGTTCTCCGTCTAATGAGGAGGGGCTTGTCGGCCTGGCGACATTTGCCCTCGACCG
GTTGCGTATCCACCCCTCTTCGGAGTTGTCGATCATTCTCGTCGACGAGGAAACGATGGAGGCTTACCACGAGAAATTCA
TGGGTCTTCCTGGTCCGACCGATGTCTTGAGCTTCCCGATGGATGAGATGCGTGCCCCCGGCGACGACGAGGATCCGCCT
TCTGGGCTACTCGGTGACATCGTGCTGTGCCCGACCGTCACAGCTCGCCAAGCTGCTGAGAATGGTCGCACTCCCGACGG
GGAGGCGGAATACCTCCTCATCCACGGGTTGTTGCACCTGCTCGGCCACGACCATGCTGAACCCGGAGAGAAGCGCGTCA
TGTTTAGACTCAACGACGAGATCATCGCGGCATGGGATGACCATCGAGAACAGACAGGTCAGCGGTGA

Upstream 100 bases:

>100_bases
ATGTCGTCCGTCACCGTCTGGTGGGCAAGATTGTTGCTGCTTACGACGTTGCCTGCGAGTCCCGTGGCGCCAAAAATTCG
CGCAAGAATAGGAAGACCCG

Downstream 100 bases:

>100_bases
CACGGCAAGAATGGATCGTTCTGGCGATCGCCTTCATCTTCACAGTGTTGGCAAGCCTCAATGTGGCCATGGAGACGGCC
CTTCAACACATGTCTCACTC

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MIDITNESGSPSNEEGLVGLATFALDRLRIHPSSELSIILVDEETMEAYHEKFMGLPGPTDVLSFPMDEMRAPGDDEDPP
SGLLGDIVLCPTVTARQAAENGRTPDGEAEYLLIHGLLHLLGHDHAEPGEKRVMFRLNDEIIAAWDDHREQTGQR

Sequences:

>Translated_155_residues
MIDITNESGSPSNEEGLVGLATFALDRLRIHPSSELSIILVDEETMEAYHEKFMGLPGPTDVLSFPMDEMRAPGDDEDPP
SGLLGDIVLCPTVTARQAAENGRTPDGEAEYLLIHGLLHLLGHDHAEPGEKRVMFRLNDEIIAAWDDHREQTGQR
>Mature_155_residues
MIDITNESGSPSNEEGLVGLATFALDRLRIHPSSELSIILVDEETMEAYHEKFMGLPGPTDVLSFPMDEMRAPGDDEDPP
SGLLGDIVLCPTVTARQAAENGRTPDGEAEYLLIHGLLHLLGHDHAEPGEKRVMFRLNDEIIAAWDDHREQTGQR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=119, Percent_Identity=35.2941176470588, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_PROAC (Q6A976)

Other databases:

- EMBL:   AE017283
- RefSeq:   YP_055648.1
- ProteinModelPortal:   Q6A976
- SMR:   Q6A976
- GeneID:   2930905
- GenomeReviews:   AE017283_GR
- KEGG:   pac:PPA0937
- NMPDR:   fig|267747.1.peg.925
- HOGENOM:   HBG734136
- OMA:   MDVHPAA
- ProtClustDB:   PRK00016
- BioCyc:   PACN267747:PPA0937-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17083; Mature: 17083

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDITNESGSPSNEEGLVGLATFALDRLRIHPSSELSIILVDEETMEAYHEKFMGLPGPT
CEEECCCCCCCCCCCCEEHHHHHHHHHHEECCCCCEEEEEECHHHHHHHHHHHCCCCCCH
DVLSFPMDEMRAPGDDEDPPSGLLGDIVLCPTVTARQAAENGRTPDGEAEYLLIHGLLHL
HHHHCCHHHHCCCCCCCCCCCCCCCCEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHHH
LGHDHAEPGEKRVMFRLNDEIIAAWDDHREQTGQR
HCCCCCCCCCCEEEEEECCCEEEECCCHHHHCCCC
>Mature Secondary Structure
MIDITNESGSPSNEEGLVGLATFALDRLRIHPSSELSIILVDEETMEAYHEKFMGLPGPT
CEEECCCCCCCCCCCCEEHHHHHHHHHHEECCCCCEEEEEECHHHHHHHHHHHCCCCCCH
DVLSFPMDEMRAPGDDEDPPSGLLGDIVLCPTVTARQAAENGRTPDGEAEYLLIHGLLHL
HHHHCCHHHHCCCCCCCCCCCCCCCCEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHHH
LGHDHAEPGEKRVMFRLNDEIIAAWDDHREQTGQR
HCCCCCCCCCCEEEEEECCCEEEECCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA