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The map label for this gene is araD [H]

Identifier: 50842369

GI number: 50842369

Start: 959190

End: 959858

Strand: Direct

Name: araD [H]

Synonym: PPA0882

Alternate gene names: 50842369

Gene position: 959190-959858 (Clockwise)

Preceding gene: 50842368

Following gene: 50842370

Centisome position: 37.46

GC content: 59.04

Gene sequence:

>669_bases
ATGCTTGAAAAGCTCAAGACAGACGTCTGTCGAGGCAACCTCGAACTGCCCCGTCATGGACTTGTGACGTGGACCTCGGG
CAACCTGTCCGCTCGGGACCCTGAGACCGGCCTTGTCGTCATCAAGCCGTCCGGGATGCTGTATGACGCTATGACCCCGG
ACGATATGGTTGTTGTCGACCTTGACGGCAAGGTCGTGGAGGGGCATCGAGGAGCGTCCTCGGATACCGCCTCACACTTG
TATGTCTACCGACGTCGCGACGACATTCGGAGCATTATCCACACCCATTCCACCTTCGCCACCGCGTGGGCGGCCACTGG
CCAGGACATCCCCTGTGCAGTGACGGCCATCGCTGATGAGTTTGGGGGGCCAGTGCCGTGCGGCGACTACGCCCAGATTG
GCACTGAACAGATTGGTGAGCAGATCATGCGGTTCATTGACCAGTCGCCAGCGGTGCTACTCAAAAAGCATGGTGTCTTC
ACTGTCGGGACCTCGATCGAGAAGGCCATCAAAGCAGCTGTCATGGTTGAGGACGTCGCCAAGACCCTCACCTACGCCAA
ACTCATCGGCGAGATCTCCCCACTTCCACAGTCGGAGATCGACTCCAACCACGATCGATACACCAATCGTTACGGCACTG
CGGCAGCATCCACGGGGGTGACGGCATGA

Upstream 100 bases:

>100_bases
CGCCCTCTTTTGACCCTGGGCTGGGGGCTCGGCATGAATTCCGGGCCGCCCAGTTCTGCGCCTCTACAAATTTTCATTAT
TGTTCAAAGGAGAACCCTTC

Downstream 100 bases:

>100_bases
CCTACGACATCTCGACCATCGGCGAGGGGCAGATCCGGCTCACCTGCTATAAGGGTGAACGTCTCATTAATGCCCAGCAG
TTGCGTGCCACCGCAGCCTG

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MLEKLKTDVCRGNLELPRHGLVTWTSGNLSARDPETGLVVIKPSGMLYDAMTPDDMVVVDLDGKVVEGHRGASSDTASHL
YVYRRRDDIRSIIHTHSTFATAWAATGQDIPCAVTAIADEFGGPVPCGDYAQIGTEQIGEQIMRFIDQSPAVLLKKHGVF
TVGTSIEKAIKAAVMVEDVAKTLTYAKLIGEISPLPQSEIDSNHDRYTNRYGTAAASTGVTA

Sequences:

>Translated_222_residues
MLEKLKTDVCRGNLELPRHGLVTWTSGNLSARDPETGLVVIKPSGMLYDAMTPDDMVVVDLDGKVVEGHRGASSDTASHL
YVYRRRDDIRSIIHTHSTFATAWAATGQDIPCAVTAIADEFGGPVPCGDYAQIGTEQIGEQIMRFIDQSPAVLLKKHGVF
TVGTSIEKAIKAAVMVEDVAKTLTYAKLIGEISPLPQSEIDSNHDRYTNRYGTAAASTGVTA
>Mature_222_residues
MLEKLKTDVCRGNLELPRHGLVTWTSGNLSARDPETGLVVIKPSGMLYDAMTPDDMVVVDLDGKVVEGHRGASSDTASHL
YVYRRRDDIRSIIHTHSTFATAWAATGQDIPCAVTAIADEFGGPVPCGDYAQIGTEQIGEQIMRFIDQSPAVLLKKHGVF
TVGTSIEKAIKAAVMVEDVAKTLTYAKLIGEISPLPQSEIDSNHDRYTNRYGTAAASTGVTA

Specific function: Probable Pentulose-5-Phosphate-4-Epimerase. Probably Involved In A Metabolic Pathway With Sgah And Sgau. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790642, Length=214, Percent_Identity=44.8598130841121, Blast_Score=161, Evalue=4e-41,
Organism=Escherichia coli, GI1790008, Length=233, Percent_Identity=42.0600858369099, Blast_Score=160, Evalue=6e-41,
Organism=Escherichia coli, GI1786247, Length=229, Percent_Identity=41.0480349344978, Blast_Score=149, Evalue=1e-37,
Organism=Escherichia coli, GI1789164, Length=193, Percent_Identity=31.6062176165803, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1789094, Length=185, Percent_Identity=24.8648648648649, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 23918; Mature: 23918

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEKLKTDVCRGNLELPRHGLVTWTSGNLSARDPETGLVVIKPSGMLYDAMTPDDMVVVD
CCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCEEEECCCCCCEEEEE
LDGKVVEGHRGASSDTASHLYVYRRRDDIRSIIHTHSTFATAWAATGQDIPCAVTAIADE
CCCEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
FGGPVPCGDYAQIGTEQIGEQIMRFIDQSPAVLLKKHGVFTVGTSIEKAIKAAVMVEDVA
HCCCCCCCCHHHHCHHHHHHHHHHHHCCCCCEEEECCCEEEECHHHHHHHHHHHHHHHHH
KTLTYAKLIGEISPLPQSEIDSNHDRYTNRYGTAAASTGVTA
HHHHHHHHHHHCCCCCHHHCCCCCCHHHHCCCCHHCCCCCCC
>Mature Secondary Structure
MLEKLKTDVCRGNLELPRHGLVTWTSGNLSARDPETGLVVIKPSGMLYDAMTPDDMVVVD
CCHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEEEECCCCEEEECCCCCCEEEEE
LDGKVVEGHRGASSDTASHLYVYRRRDDIRSIIHTHSTFATAWAATGQDIPCAVTAIADE
CCCEEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
FGGPVPCGDYAQIGTEQIGEQIMRFIDQSPAVLLKKHGVFTVGTSIEKAIKAAVMVEDVA
HCCCCCCCCHHHHCHHHHHHHHHHHHCCCCCEEEECCCEEEECHHHHHHHHHHHHHHHHH
KTLTYAKLIGEISPLPQSEIDSNHDRYTNRYGTAAASTGVTA
HHHHHHHHHHHCCCCCHHHCCCCCCHHHHCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA