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The map label for this gene is deoR [H]

Identifier: 50842365

GI number: 50842365

Start: 955443

End: 956387

Strand: Reverse

Name: deoR [H]

Synonym: PPA0878

Alternate gene names: 50842365

Gene position: 956387-955443 (Counterclockwise)

Preceding gene: 50842376

Following gene: 50842364

Centisome position: 37.36

GC content: 60.74

Gene sequence:

>945_bases
ATGACTGATCGCGAACATATCCAGACCATGCTGACGGTCGCGAGGCGGTACTGGTTAGAGCAGGCCACTCAAGCCGAGAT
CGCAGCCGAGATCGGCTACTCCCGCTCGATGGTGTCCAGGCTTCTTGACGAGGCGAGGCGTCGCGGGATCATCACGTTCA
CAGTGCAGCATCCTTTGGAGCGAGCCATCGAGTTAGAGGACGCTCTGACACGCACCTTCGGGCTGACCTGCGCCCGAGTC
GCGATGTCCAACGACAATGCCACGGCCGACGAGGTGGCGCGGATGGCTGCCGACCTGGTGACGACGTACATGCATCCCGA
TTCGGTAATCGCGTTGTCGAACGGACGCGGGGTGGCGTCGGTGGTGCATGCGATGACGCCGATACGCCGTCCGGGGGCCA
CGGTGGTGCAGGCTATTGGTGGGACAGCCAAGGGAAATTTGTTGTTGGACTCTCCCGAGTTGTGCCGTCAGCTAGCAGAA
CGAATCGGGTGTGCATACCGGGTGATGCCGGCTCCGGTGCTGGTGTCGAATCCTCAGGCAGCGGCCGCGTTGAAGGCCGA
GGAGTCAGTGGGTATGACGATCGCGATGGCCTCTCACGCAGACATCTTGGTGACCGGCGTAGGAACAGTCGGAATGCATT
CGGTGGCGCCGATCTTCGACCACGTGATGTCGGAGCGCGCACACACAGAGTTGTTGTCACGCGGGGCCGTAGGACACATC
TGCGGGCATCACGTCGATACCCGGGGTCGTCACATTGACGCAGACTTTTGTCAAGGGTTGATGGCAGTTCCGCTGGACCG
GATTCCATCAATCACCCACGTCATCGTCAGCGCCTTTGGATCCGAAAAGGTGCCGGCCCTAACGGCAATTCTGCGAGGTA
AATGGGTGACGGATCTGGTAACCGACATAGCGACGGCGAGGGCGGTGCTAGGCCATCTTGACTGA

Upstream 100 bases:

>100_bases
ACACATGTGAATTCATCCTAAGCAGAAGGGCTAGTATGGTGGCTTCACTTCCCGTTTTAACGGCGGACCTACTACAAAGA
TTCACATCTGTGAGACACTC

Downstream 100 bases:

>100_bases
GATTCCAGGGCTCGCCGGCTGTTAGGAACAGCATCCTGGCCGGGGGACGATTTCCGTGAACGCTGACGCCACACGGACCA
GTATGGCAGGTTCACGGTTT

Product: SorC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MTDREHIQTMLTVARRYWLEQATQAEIAAEIGYSRSMVSRLLDEARRRGIITFTVQHPLERAIELEDALTRTFGLTCARV
AMSNDNATADEVARMAADLVTTYMHPDSVIALSNGRGVASVVHAMTPIRRPGATVVQAIGGTAKGNLLLDSPELCRQLAE
RIGCAYRVMPAPVLVSNPQAAAALKAEESVGMTIAMASHADILVTGVGTVGMHSVAPIFDHVMSERAHTELLSRGAVGHI
CGHHVDTRGRHIDADFCQGLMAVPLDRIPSITHVIVSAFGSEKVPALTAILRGKWVTDLVTDIATARAVLGHLD

Sequences:

>Translated_314_residues
MTDREHIQTMLTVARRYWLEQATQAEIAAEIGYSRSMVSRLLDEARRRGIITFTVQHPLERAIELEDALTRTFGLTCARV
AMSNDNATADEVARMAADLVTTYMHPDSVIALSNGRGVASVVHAMTPIRRPGATVVQAIGGTAKGNLLLDSPELCRQLAE
RIGCAYRVMPAPVLVSNPQAAAALKAEESVGMTIAMASHADILVTGVGTVGMHSVAPIFDHVMSERAHTELLSRGAVGHI
CGHHVDTRGRHIDADFCQGLMAVPLDRIPSITHVIVSAFGSEKVPALTAILRGKWVTDLVTDIATARAVLGHLD
>Mature_313_residues
TDREHIQTMLTVARRYWLEQATQAEIAAEIGYSRSMVSRLLDEARRRGIITFTVQHPLERAIELEDALTRTFGLTCARVA
MSNDNATADEVARMAADLVTTYMHPDSVIALSNGRGVASVVHAMTPIRRPGATVVQAIGGTAKGNLLLDSPELCRQLAER
IGCAYRVMPAPVLVSNPQAAAALKAEESVGMTIAMASHADILVTGVGTVGMHSVAPIFDHVMSERAHTELLSRGAVGHIC
GHHVDTRGRHIDADFCQGLMAVPLDRIPSITHVIVSAFGSEKVPALTAILRGKWVTDLVTDIATARAVLGHLD

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=304, Percent_Identity=27.9605263157895, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI87082414, Length=314, Percent_Identity=24.5222929936306, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 33733; Mature: 33602

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDREHIQTMLTVARRYWLEQATQAEIAAEIGYSRSMVSRLLDEARRRGIITFTVQHPLE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCEEEEEEHHHHH
RAIELEDALTRTFGLTCARVAMSNDNATADEVARMAADLVTTYMHPDSVIALSNGRGVAS
HHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHH
VVHAMTPIRRPGATVVQAIGGTAKGNLLLDSPELCRQLAERIGCAYRVMPAPVLVSNPQA
HHHHHCCCCCCCHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCCEEEECCCCEEECCCCH
AAALKAEESVGMTIAMASHADILVTGVGTVGMHSVAPIFDHVMSERAHTELLSRGAVGHI
HHHHHHHHHCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
CGHHVDTRGRHIDADFCQGLMAVPLDRIPSITHVIVSAFGSEKVPALTAILRGKWVTDLV
HCCCCCCCCCEECHHHHHHHHHCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHH
TDIATARAVLGHLD
HHHHHHHHHHHCCC
>Mature Secondary Structure 
TDREHIQTMLTVARRYWLEQATQAEIAAEIGYSRSMVSRLLDEARRRGIITFTVQHPLE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCEEEEEEHHHHH
RAIELEDALTRTFGLTCARVAMSNDNATADEVARMAADLVTTYMHPDSVIALSNGRGVAS
HHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHH
VVHAMTPIRRPGATVVQAIGGTAKGNLLLDSPELCRQLAERIGCAYRVMPAPVLVSNPQA
HHHHHCCCCCCCHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCCEEEECCCCEEECCCCH
AAALKAEESVGMTIAMASHADILVTGVGTVGMHSVAPIFDHVMSERAHTELLSRGAVGHI
HHHHHHHHHCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
CGHHVDTRGRHIDADFCQGLMAVPLDRIPSITHVIVSAFGSEKVPALTAILRGKWVTDLV
HCCCCCCCCCEECHHHHHHHHHCCHHHCCHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHH
TDIATARAVLGHLD
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]