| Definition | Propionibacterium acnes KPA171202, complete genome. |
|---|---|
| Accession | NC_006085 |
| Length | 2,560,265 |
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The map label for this gene is rne [H]
Identifier: 50842313
GI number: 50842313
Start: 906906
End: 909530
Strand: Direct
Name: rne [H]
Synonym: PPA0826
Alternate gene names: 50842313
Gene position: 906906-909530 (Clockwise)
Preceding gene: 50842312
Following gene: 50842314
Centisome position: 35.42
GC content: 60.84
Gene sequence:
>2625_bases GTGCTCGACGAGACTGACAACACCACACTGAAATCTGGCGGGAATTCCACTGCTGGAATTCCCGCTCCTCGACGTCGTCG GGCCGCGTCGCGCCCCGCTGGGGCTCCGGCCCCCGTCGAGACGATGGGCGCGCCCGTGGCGATTACCGCTGCAGGATCAG GCGGTTCGATTGTTACTTCCGATGTGGAGGCTTCTGATCTGCCTCGTCCCCCGATGGGGCGACGTCGCAAGGCGACGAGC ACTCCGCACGACGTTAAGACTGATGTTCCGAAGGTCGTCTCCCTAGAGCCGACGCCGGAGGAGCCCGAGTCCGCGGACAC AAGGACCCAGGAGAAGCCGCGTCGTACCCGTCGTGGTGCTTCTGAAACCGCGCCGTCCACCGAGGCAGAGCGGGGTACCT CCCAGCGTCGTCGCGCCACTCGCCGTCGCTCCTCTCGATCCGCAGAAAAGATTGAGGGAACGACTGAGGCGACGACCGCG ACCAATAAGGGCGATGGTGCTGACGACGATCCCATCAATGTCGCACTGACTGAAGCCAAGGCCCGGGCCCGTAACCATAA GGTTGAGGGTGCCCTAGCTAACCCCTTTGGATTTAAAGAAGGCGAAGAGCGCTCCGCGAGCGACATCCTCGACTCTTTGG CCGCTGAGATCGGTGGGGGAGAGGCTGCTATACCGAAGCGCCGTCGCCGTCGTGCCACTCGACCGTCCGAGGCTGGTAGT CACTCTGCGGAGACCTCCGGGAGCACTGACAAGGTGGCCCCGGTTGAGGAGGATAAGGGCGAGATCAAGGACCGCCACAG TTCCGATAAGAAGAGCGAGAAGTCTGATTACGACACCACGGATGTGGTGGAGGAGACTGTCGCTGACACCGAGGAGGACG GCCAGAACCGTCGTCGCCGTCGTCGCGGTGGGCGTCGCCGTCGTCGCAGTGAAGACACCGAGGACAGTGCGTCTGAGGAC GAGTCGAGCGATAGTGACGACTCACAAACCAGCTCTGACAATGATTCTGAGTCCAGTAGCTCGGATGCCACTCACCGTCG CCGTCGTCGCCGTCGTCGCCGTGGCGAGGACATCAGCGGTTCTGACGACGACCCCAGCGACGTCGTCATCAAGGTGCGCG AGCCGAGGTCGCGTCAGTCGGTGGCTGATGAGGTCACCGGTATCGAGGGTTCGACTCGTGTCGAGGCTAAGAAGCAGCGT CGTCGGGAGGGACGTGCCGCCGGACGTCGCCGCAGTGCCGTCATCACCGACGCGGAGTTCCTGGCCCGTCGCGAGTCGGT CGACCGCAAGATGATTGTGCGTCAGTCTGATGACTACTCTCAGCTGGCGGTGCTGGAAGATGGGGTGCTCGTTGAGCATT ACGTTGACCGCGCTTCTGCCACCTCCTCGATCGGCAATATCTACCTGGGTAAAGTGCAGAACGTCTTGCCGTCGATGGAG GCCGCCTTCATTGACATTGGCCGTGGTCGCAACGCTGTGCTCTACGCCGGAGAGGTTGATTGGGCCAAGTATGGCAAGGA GGGCGAGGATAAGCGCATCGAGCACGTGCTAAAATCCGGCGACCAGGTTCTGGTACAGGTCACCAAGGATCCAGTGGGTG CCAAGGGTGCCCGTTTGACTAGCCATATTTCGGTACCCGGACGCTTTGTTGTCTATTCGCCTGGCGGCCACCTTTCGGGG ATTTCCCGCAAGCTGGCTGATTCGGAGCGCAAACGCCTTAAGAAAATCGTTGAGAACAACATCCCGTCGGATGCTTCCGT CATCGTGCGCACTGCCGCGGAAGGAGCCACCGAGGAAGACCTGGTCCGTGACATTAACCGTCTTAAGGTTCAGTGGGAGG TCATTGAGCGCAAGGTCAGCAACAGCAAAGCTCCGCTGATGCTATACACCGAGCCCGATTTAACGGTGCGTATCATCCGC GACTTGTTCACTGCGGACTTCTCCGAGCTTGTCATTGCCGGCAATGGTGGCCCCGATGACGCCTACGACACCATTAAGGC CTACGTTGATCACGTGGCTCCGGAGATGGCGTCGCGGTTAATCCATTGGGAGCACACCGACAAGGACCCCTTTGCCGAGT ACCGCATTGACGAGCAGGTCGCGAAGGCTTTGGAGCGCAAGGTTTACCTCCCGTCGGGAGGGTCCCTTGTCATTGACCGC ACCGAGGCTATGACGGTGATCGACGTCAATACCGGAAAGTTCACCGGGTCAGCGGGTAACCTTGAGGCCACTGTCACTGC TAACAACTTGGAGGCGGCTGAGGAGATCGTGCGTCAGCTACGATTGCGCGATATTGGTGGAATCATTGTCATTGACTTCA TCGACATGGTGCTGCCGACCAACCGTGAACTTCTCGTGCGCCGTCTCACCGAATGCCTGGGCCGGGATCGTACCCGACAC CAGGTCGCTGAGGTGACATCGCTGGGCTTAGTTCAAATGACCCGCAAGAAGATCGGTACCGGGCTGGCTGAGGCTTTCAC TGAGCAGTGCGAGGCCTGTGGCGGTCGCGGCTACCGCCGCTTCGATAAGCCGGTCGATTCCCAGGCTCCGGCCGACGGTG GCGAACGCTCGAAGGGTCGTGGTCGCGGTCATAAAGGCTCGTCGGGCAAGTCCCACTCCAAGTGA
Upstream 100 bases:
>100_bases TCAGTACAGCGCGAGGCGTGTGCATACGTCCGTGGGAGAACTCCTGCAGGGCCGTGACCCGGGTGGGCACTGACCGTGCC GAAAGGCCAAGGAGAGCACA
Downstream 100 bases:
>100_bases GGTTTCGGCCCACAGGGTGTGGGTGGATGGTCGTTTTGACCGTCCACCGCACGAAATGTAAAATGAGCAGCCGGTCCGAC GTGCATCGTCGGTCACGTTT
Product: putative ribonuclease
Products: NA
Alternate protein names: RNase E [H]
Number of amino acids: Translated: 874; Mature: 874
Protein sequence:
>874_residues MLDETDNTTLKSGGNSTAGIPAPRRRRAASRPAGAPAPVETMGAPVAITAAGSGGSIVTSDVEASDLPRPPMGRRRKATS TPHDVKTDVPKVVSLEPTPEEPESADTRTQEKPRRTRRGASETAPSTEAERGTSQRRRATRRRSSRSAEKIEGTTEATTA TNKGDGADDDPINVALTEAKARARNHKVEGALANPFGFKEGEERSASDILDSLAAEIGGGEAAIPKRRRRRATRPSEAGS HSAETSGSTDKVAPVEEDKGEIKDRHSSDKKSEKSDYDTTDVVEETVADTEEDGQNRRRRRRGGRRRRRSEDTEDSASED ESSDSDDSQTSSDNDSESSSSDATHRRRRRRRRRGEDISGSDDDPSDVVIKVREPRSRQSVADEVTGIEGSTRVEAKKQR RREGRAAGRRRSAVITDAEFLARRESVDRKMIVRQSDDYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSME AAFIDIGRGRNAVLYAGEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPGGHLSG ISRKLADSERKRLKKIVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWEVIERKVSNSKAPLMLYTEPDLTVRIIR DLFTADFSELVIAGNGGPDDAYDTIKAYVDHVAPEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDR TEAMTVIDVNTGKFTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECLGRDRTRH QVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQAPADGGERSKGRGRGHKGSSGKSHSK
Sequences:
>Translated_874_residues MLDETDNTTLKSGGNSTAGIPAPRRRRAASRPAGAPAPVETMGAPVAITAAGSGGSIVTSDVEASDLPRPPMGRRRKATS TPHDVKTDVPKVVSLEPTPEEPESADTRTQEKPRRTRRGASETAPSTEAERGTSQRRRATRRRSSRSAEKIEGTTEATTA TNKGDGADDDPINVALTEAKARARNHKVEGALANPFGFKEGEERSASDILDSLAAEIGGGEAAIPKRRRRRATRPSEAGS HSAETSGSTDKVAPVEEDKGEIKDRHSSDKKSEKSDYDTTDVVEETVADTEEDGQNRRRRRRGGRRRRRSEDTEDSASED ESSDSDDSQTSSDNDSESSSSDATHRRRRRRRRRGEDISGSDDDPSDVVIKVREPRSRQSVADEVTGIEGSTRVEAKKQR RREGRAAGRRRSAVITDAEFLARRESVDRKMIVRQSDDYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSME AAFIDIGRGRNAVLYAGEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPGGHLSG ISRKLADSERKRLKKIVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWEVIERKVSNSKAPLMLYTEPDLTVRIIR DLFTADFSELVIAGNGGPDDAYDTIKAYVDHVAPEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDR TEAMTVIDVNTGKFTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECLGRDRTRH QVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQAPADGGERSKGRGRGHKGSSGKSHSK >Mature_874_residues MLDETDNTTLKSGGNSTAGIPAPRRRRAASRPAGAPAPVETMGAPVAITAAGSGGSIVTSDVEASDLPRPPMGRRRKATS TPHDVKTDVPKVVSLEPTPEEPESADTRTQEKPRRTRRGASETAPSTEAERGTSQRRRATRRRSSRSAEKIEGTTEATTA TNKGDGADDDPINVALTEAKARARNHKVEGALANPFGFKEGEERSASDILDSLAAEIGGGEAAIPKRRRRRATRPSEAGS HSAETSGSTDKVAPVEEDKGEIKDRHSSDKKSEKSDYDTTDVVEETVADTEEDGQNRRRRRRGGRRRRRSEDTEDSASED ESSDSDDSQTSSDNDSESSSSDATHRRRRRRRRRGEDISGSDDDPSDVVIKVREPRSRQSVADEVTGIEGSTRVEAKKQR RREGRAAGRRRSAVITDAEFLARRESVDRKMIVRQSDDYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSME AAFIDIGRGRNAVLYAGEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPGGHLSG ISRKLADSERKRLKKIVENNIPSDASVIVRTAAEGATEEDLVRDINRLKVQWEVIERKVSNSKAPLMLYTEPDLTVRIIR DLFTADFSELVIAGNGGPDDAYDTIKAYVDHVAPEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDR TEAMTVIDVNTGKFTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECLGRDRTRH QVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRRFDKPVDSQAPADGGERSKGRGRGHKGSSGKSHSK
Specific function: Involved In The Processing Of The 5'End Of 16s Rrna. Could Be Involved In Chromosome Segregation And Cell Division. It May Be One Of The Components Of The Cytoplasmic Axial Filaments Bundles Or Merely Regulate The Formation Of This Structure. [C]
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI87082235, Length=417, Percent_Identity=38.1294964028777, Blast_Score=253, Evalue=3e-68, Organism=Escherichia coli, GI1787325, Length=388, Percent_Identity=38.1443298969072, Blast_Score=244, Evalue=2e-65,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]
EC number: =3.1.26.12 [H]
Molecular weight: Translated: 95594; Mature: 95594
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDETDNTTLKSGGNSTAGIPAPRRRRAASRPAGAPAPVETMGAPVAITAAGSGGSIVTS CCCCCCCCEECCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHCCCCEEEEECCCCCCEEEC DVEASDLPRPPMGRRRKATSTPHDVKTDVPKVVSLEPTPEEPESADTRTQEKPRRTRRGA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCC SETAPSTEAERGTSQRRRATRRRSSRSAEKIEGTTEATTATNKGDGADDDPINVALTEAK CCCCCCCHHHCCHHHHHHHHHHHHHCCHHHHCCCCHHCCCCCCCCCCCCCCCEEEEHHHH ARARNHKVEGALANPFGFKEGEERSASDILDSLAAEIGGGEAAIPKRRRRRATRPSEAGS HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCC HSAETSGSTDKVAPVEEDKGEIKDRHSSDKKSEKSDYDTTDVVEETVADTEEDGQNRRRR CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHCCHHHHHHHHHH RRGGRRRRRSEDTEDSASEDESSDSDDSQTSSDNDSESSSSDATHRRRRRRRRRGEDISG HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC SDDDPSDVVIKVREPRSRQSVADEVTGIEGSTRVEAKKQRRREGRAAGRRRSAVITDAEF CCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEECHHHH LARRESVDRKMIVRQSDDYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSME HHHHHHHHHHHHHCCCCCCHHEEHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH AAFIDIGRGRNAVLYAGEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLT HHHEECCCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEE SHISVPGRFVVYSPGGHLSGISRKLADSERKRLKKIVENNIPSDASVIVRTAAEGATEED EEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCHHH LVRDINRLKVQWEVIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDD HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCH AYDTIKAYVDHVAPEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCEEEEC TEAMTVIDVNTGKFTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPT CCEEEEEECCCCEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEHEEHHHHHCCC NRELLVRRLTECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRR CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH FDKPVDSQAPADGGERSKGRGRGHKGSSGKSHSK HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLDETDNTTLKSGGNSTAGIPAPRRRRAASRPAGAPAPVETMGAPVAITAAGSGGSIVTS CCCCCCCCEECCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHCCCCEEEEECCCCCCEEEC DVEASDLPRPPMGRRRKATSTPHDVKTDVPKVVSLEPTPEEPESADTRTQEKPRRTRRGA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCC SETAPSTEAERGTSQRRRATRRRSSRSAEKIEGTTEATTATNKGDGADDDPINVALTEAK CCCCCCCHHHCCHHHHHHHHHHHHHCCHHHHCCCCHHCCCCCCCCCCCCCCCEEEEHHHH ARARNHKVEGALANPFGFKEGEERSASDILDSLAAEIGGGEAAIPKRRRRRATRPSEAGS HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCC HSAETSGSTDKVAPVEEDKGEIKDRHSSDKKSEKSDYDTTDVVEETVADTEEDGQNRRRR CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHCCHHHHHHHHHH RRGGRRRRRSEDTEDSASEDESSDSDDSQTSSDNDSESSSSDATHRRRRRRRRRGEDISG HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC SDDDPSDVVIKVREPRSRQSVADEVTGIEGSTRVEAKKQRRREGRAAGRRRSAVITDAEF CCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEECHHHH LARRESVDRKMIVRQSDDYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSME HHHHHHHHHHHHHCCCCCCHHEEHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH AAFIDIGRGRNAVLYAGEVDWAKYGKEGEDKRIEHVLKSGDQVLVQVTKDPVGAKGARLT HHHEECCCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEE SHISVPGRFVVYSPGGHLSGISRKLADSERKRLKKIVENNIPSDASVIVRTAAEGATEED EEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCHHH LVRDINRLKVQWEVIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDD HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCH AYDTIKAYVDHVAPEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCEEEEC TEAMTVIDVNTGKFTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPT CCEEEEEECCCCEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEHEEHHHHHCCC NRELLVRRLTECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRR CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH FDKPVDSQAPADGGERSKGRGRGHKGSSGKSHSK HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]