Click here to switch to the map view.

The map label for this gene is pdtaR [H]

Identifier: 50842259

GI number: 50842259

Start: 846596

End: 847228

Strand: Direct

Name: pdtaR [H]

Synonym: PPA0772

Alternate gene names: 50842259

Gene position: 846596-847228 (Clockwise)

Preceding gene: 50842258

Following gene: 50842261

Centisome position: 33.07

GC content: 58.61

Gene sequence:

>633_bases
GTGAGCAAGCCACAGGACCTCACTCGGTCAACCTCTGACTCGGGGGCGGAGGCGGAACATCCACGTGTCGTAGTCGCCGA
GGACGAGGCTCTTATCCGTCTCGATCTCGTCGAGCTGCTCGAGGAGCATGGTTACGAGATTGTCGGCCAAGCTAGCGACG
GCGAGGAGGCTGTCCGTCTTGCCAACGAGCTCGAGCCCGACCTGATCGTCATGGACGTCAAGATGCCCAAGATGGACGGC
ATCACTGCGGCCGACAAGATTGCCGAAGACCGTATCTGTGCTGTCGTCATGCTGACCGCTTTCTCACAGCGTGACCTCAT
CAAACGTGCCAAAGAAGCGGGTGCGATGGCCTACGTCGTCAAGCCTTTCGATGCTTCGGATGTCATTCCGGCTATCGAGA
TTGCTATGGCCCGTTTTGCCGAGATCCGCGGCGTTGAGGACGAGGTCATGGACCTGGAGGAGCGCCTCGAGTCGCGCAAG
ATTGTCGACCAGGCCAAGGGTATTTTGCAGACCAGCCTTGACCTTACTGAGCCAGAGGCCTTCCGGTGGATCCAGAAGAC
CGCCATGGATCTGCGTAAGTCAATGCGAGAGGTCGCTCAAGGAGTTATCGATCACGCCGAGAGCGAGAAGTGA

Upstream 100 bases:

>100_bases
CGAGGAGATCCGCTAGTTGGGGGCATGTGCATGTGCGGTAAGACCTCATAACCACTAAGATTGAACCGAGTTGTCAACGT
TCGACATGCAAGGAATCACC

Downstream 100 bases:

>100_bases
TCTCGGGCTGCTGGTCCTTTTAGATGACCTGACAGGTCATCCTTCCAATAGCACAGATGCGGCCCTCATCGTCGACGATT
TCGACGATGTGGGTTGTTGT

Product: putative two-component system response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSKPQDLTRSTSDSGAEAEHPRVVVAEDEALIRLDLVELLEEHGYEIVGQASDGEEAVRLANELEPDLIVMDVKMPKMDG
ITAADKIAEDRICAVVMLTAFSQRDLIKRAKEAGAMAYVVKPFDASDVIPAIEIAMARFAEIRGVEDEVMDLEERLESRK
IVDQAKGILQTSLDLTEPEAFRWIQKTAMDLRKSMREVAQGVIDHAESEK

Sequences:

>Translated_210_residues
MSKPQDLTRSTSDSGAEAEHPRVVVAEDEALIRLDLVELLEEHGYEIVGQASDGEEAVRLANELEPDLIVMDVKMPKMDG
ITAADKIAEDRICAVVMLTAFSQRDLIKRAKEAGAMAYVVKPFDASDVIPAIEIAMARFAEIRGVEDEVMDLEERLESRK
IVDQAKGILQTSLDLTEPEAFRWIQKTAMDLRKSMREVAQGVIDHAESEK
>Mature_209_residues
SKPQDLTRSTSDSGAEAEHPRVVVAEDEALIRLDLVELLEEHGYEIVGQASDGEEAVRLANELEPDLIVMDVKMPKMDGI
TAADKIAEDRICAVVMLTAFSQRDLIKRAKEAGAMAYVVKPFDASDVIPAIEIAMARFAEIRGVEDEVMDLEERLESRKI
VDQAKGILQTSLDLTEPEAFRWIQKTAMDLRKSMREVAQGVIDHAESEK

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=138, Percent_Identity=27.536231884058, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786599, Length=124, Percent_Identity=35.4838709677419, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788222, Length=113, Percent_Identity=32.7433628318584, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI87082052, Length=127, Percent_Identity=29.9212598425197, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1788192, Length=104, Percent_Identity=34.6153846153846, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23338; Mature: 23207

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPQDLTRSTSDSGAEAEHPRVVVAEDEALIRLDLVELLEEHGYEIVGQASDGEEAVRL
CCCCHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHH
ANELEPDLIVMDVKMPKMDGITAADKIAEDRICAVVMLTAFSQRDLIKRAKEAGAMAYVV
HHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
KPFDASDVIPAIEIAMARFAEIRGVEDEVMDLEERLESRKIVDQAKGILQTSLDLTEPEA
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
FRWIQKTAMDLRKSMREVAQGVIDHAESEK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKPQDLTRSTSDSGAEAEHPRVVVAEDEALIRLDLVELLEEHGYEIVGQASDGEEAVRL
CCCHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHH
ANELEPDLIVMDVKMPKMDGITAADKIAEDRICAVVMLTAFSQRDLIKRAKEAGAMAYVV
HHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
KPFDASDVIPAIEIAMARFAEIRGVEDEVMDLEERLESRKIVDQAKGILQTSLDLTEPEA
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
FRWIQKTAMDLRKSMREVAQGVIDHAESEK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]