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The map label for this gene is araQ [H]

Identifier: 50842093

GI number: 50842093

Start: 669695

End: 670585

Strand: Direct

Name: araQ [H]

Synonym: PPA0606

Alternate gene names: 50842093

Gene position: 669695-670585 (Clockwise)

Preceding gene: 50842092

Following gene: 50842094

Centisome position: 26.16

GC content: 57.91

Gene sequence:

>891_bases
GTGACCACATCCACTGTTTTTCCTGCGAGTTCGGCACTGTGCGTGCGCAAACGCTCCATCAACAAGTCCAAATTCCATGG
TTGGGGTCTCTTCAGACACTACATCGCCCTACTCGTGGTCTTTGTCGTCCTCGTGAGCCCGGTGTTTCTCCCACTGCTGG
GAGCCTTCAAGAGCTCCGGAGATCCGATCTACGGAAAGGGAGCCACGGCATTCCCGCAGCACTGGTCCCTCAACGCGTTC
GGTGAGCTGTTCCGTACTACTGACATCGTGAGGTACATCGCCAACTTGTTCGCGGTGTGCGGCCTCAACATCGTCTCTGC
CCTGGTCTTCTCCTCGGTCTGTGGCTACATGCTCTCCCGCAAGGGATGGCCGGGTCGAGGCGTGGTGACGGCCGTTGCCC
TGTCAGCTCTGATCTTCCCCTTTGAATCGATCATGCTGTCGTTGTACTCGCAGGTCCGTTCCTTCGGGTTCTACGACACC
ATCATCGGTATCTGGCCTCCAGGCATGATCGGACCCTTCCATGTGCTCCTCATGCGGGCCGCATTCCTCGGTATCCCGGA
TGAGATCGAGGACGCCGCCTATATCGACGGTGCGGGTGAAGTGCGAAGGTTCTTCACCATCTTCCTGCCACAGGTCAAGG
GATCCCTCGTCGTCGGCCTGACAGCCTTCATCTTCGCGTGGCAGGACTATCTGTGGCCGCTGCTCATCACTCAGTCCTCC
TCGAACTACACGATGATGATCGGTATCGCGCAGCTGCAGTCCTCATTCGGAACGGACTACCGAATCGTGCTCGCTGGCGC
CATTACTGCCGTGATCCCCATCTTCTTGGTGTTCTTAGCCTCCCAGCGCTACTTCTTCCGTGGCATCGAGGAAGGCGGAC
TGAAGTTCTGA

Upstream 100 bases:

>100_bases
CTCGATGATCGGCTGCCGCCGTCTTCCTCTTCGTCATGACCGTTGGTTTCATCATTATCGGTCAGGTTTTTAACCGTCGC
TCTGGTGAGAAGTGATACCG

Downstream 100 bases:

>100_bases
GCTGTGCCACCCTCACCCATCCACACAACGCACTTATGACATTTGGGACTCCCATGCCTTTCCCCCGACACAAAGAAGTG
AACCATGACCGACAATGCTG

Product: putative transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTTSTVFPASSALCVRKRSINKSKFHGWGLFRHYIALLVVFVVLVSPVFLPLLGAFKSSGDPIYGKGATAFPQHWSLNAF
GELFRTTDIVRYIANLFAVCGLNIVSALVFSSVCGYMLSRKGWPGRGVVTAVALSALIFPFESIMLSLYSQVRSFGFYDT
IIGIWPPGMIGPFHVLLMRAAFLGIPDEIEDAAYIDGAGEVRRFFTIFLPQVKGSLVVGLTAFIFAWQDYLWPLLITQSS
SNYTMMIGIAQLQSSFGTDYRIVLAGAITAVIPIFLVFLASQRYFFRGIEEGGLKF

Sequences:

>Translated_296_residues
MTTSTVFPASSALCVRKRSINKSKFHGWGLFRHYIALLVVFVVLVSPVFLPLLGAFKSSGDPIYGKGATAFPQHWSLNAF
GELFRTTDIVRYIANLFAVCGLNIVSALVFSSVCGYMLSRKGWPGRGVVTAVALSALIFPFESIMLSLYSQVRSFGFYDT
IIGIWPPGMIGPFHVLLMRAAFLGIPDEIEDAAYIDGAGEVRRFFTIFLPQVKGSLVVGLTAFIFAWQDYLWPLLITQSS
SNYTMMIGIAQLQSSFGTDYRIVLAGAITAVIPIFLVFLASQRYFFRGIEEGGLKF
>Mature_295_residues
TTSTVFPASSALCVRKRSINKSKFHGWGLFRHYIALLVVFVVLVSPVFLPLLGAFKSSGDPIYGKGATAFPQHWSLNAFG
ELFRTTDIVRYIANLFAVCGLNIVSALVFSSVCGYMLSRKGWPGRGVVTAVALSALIFPFESIMLSLYSQVRSFGFYDTI
IGIWPPGMIGPFHVLLMRAAFLGIPDEIEDAAYIDGAGEVRRFFTIFLPQVKGSLVVGLTAFIFAWQDYLWPLLITQSSS
NYTMMIGIAQLQSSFGTDYRIVLAGAITAVIPIFLVFLASQRYFFRGIEEGGLKF

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=288, Percent_Identity=26.0416666666667, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1789860, Length=172, Percent_Identity=29.0697674418605, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790464, Length=240, Percent_Identity=25.8333333333333, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32658; Mature: 32527

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSTVFPASSALCVRKRSINKSKFHGWGLFRHYIALLVVFVVLVSPVFLPLLGAFKSSG
CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DPIYGKGATAFPQHWSLNAFGELFRTTDIVRYIANLFAVCGLNIVSALVFSSVCGYMLSR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KGWPGRGVVTAVALSALIFPFESIMLSLYSQVRSFGFYDTIIGIWPPGMIGPFHVLLMRA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHH
AFLGIPDEIEDAAYIDGAGEVRRFFTIFLPQVKGSLVVGLTAFIFAWQDYLWPLLITQSS
HHHCCCCHHCCHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECC
SNYTMMIGIAQLQSSFGTDYRIVLAGAITAVIPIFLVFLASQRYFFRGIEEGGLKF
CCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCC
>Mature Secondary Structure 
TTSTVFPASSALCVRKRSINKSKFHGWGLFRHYIALLVVFVVLVSPVFLPLLGAFKSSG
CCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DPIYGKGATAFPQHWSLNAFGELFRTTDIVRYIANLFAVCGLNIVSALVFSSVCGYMLSR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KGWPGRGVVTAVALSALIFPFESIMLSLYSQVRSFGFYDTIIGIWPPGMIGPFHVLLMRA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHH
AFLGIPDEIEDAAYIDGAGEVRRFFTIFLPQVKGSLVVGLTAFIFAWQDYLWPLLITQSS
HHHCCCCHHCCHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECC
SNYTMMIGIAQLQSSFGTDYRIVLAGAITAVIPIFLVFLASQRYFFRGIEEGGLKF
CCEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]