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The map label for this gene is ynfJ [C]

Identifier: 50841571

GI number: 50841571

Start: 86995

End: 88281

Strand: Direct

Name: ynfJ [C]

Synonym: PPA0080

Alternate gene names: 50841571

Gene position: 86995-88281 (Clockwise)

Preceding gene: 50841570

Following gene: 50841572

Centisome position: 3.4

GC content: 63.95

Gene sequence:

>1287_bases
GTGGTCACCTCACGGATCCGATTCGTTGCCGCCGTCGTACTGACGGGGTTGGCGTCGGGACTCATCGGTGGCCTTACAAG
CGAACTGTCCCACCTCATTGAGGTCTGCGCCTTCGGTGTGCCCTTCTCCTCGTCGACGACGGGTGTTGGGGAAGTCGTTA
TGTGGCGACGCCTCGTCGCGCCGATTATGGGTGCTCTCATTGCGGGCTTGACGTGGCGGTGGCTGCGTCCGTTCCCATCG
GGGTCGATTACCTCGGTGCGACAGGCCATCGACTCTCCGACGCGGCTACGCCCAGTCGAGACCATCGTTGACGCCCTCGC
CCAGCTCGTCGTCGTCGGGTCAGGAAGCTCCCTAGGCCGAGAGGCGGCACCGCGTCAGATGGCTGCCCTGGCTGCCCAAG
GGCTATCCGACACTTTCCGAGTCGACGTCGCCACCCGGCGGGTTGTGCTGGCCAGCGCCGCCGGTGCCGGCCTGGCATCG
GTCTATAACGTGCCCGTCGCTGGAGCGCTGTACGCCCTAGAACTGACGGTGCGCCCTGATCTTCGCACCAAACGTGGCTG
GGGACAGGTGGGAATAGCCGGCGTCATCTCCGTCCTATCAACGGTGACGGCATGGTTGTTGAACCATGACCGCCCCATCT
ATCGTTCACCAGCCGCCACAGTGACAGGTCCCGGCCTTGGCTGGATGGTTCTTGTCGTTGCGGTTTCCACCGTTGTAGGA
GCCGGGATGGGAGTGCTCTTTGGGGAGATGAAACGGCGAGTCCCGGTTACCTCCAGGCTGTGGTGGACGGTTCCGTTGGG
ATCGGCCGGAGTGACCGCCATCGCTCTGGCGGCACCTCAAGTGGTCGGAAATGGCCAGGTCATCGTCAATCTGGTGCTGG
CCCATCCTGTGGCTCCAGCTAGTTTGGTGATCCTGCTCGTCGGCAAGATTCTCGCCACGACGGTGGCATTACGCTCCGGT
GCTGCCGGCGGTCTACTCACCCCGTCCCTATCCGCAGGCGCCCTGGTCGGAGCTCTGGTAGCCGTGGTGGCAGGGATCGA
CGCACCCTCCCAGATCGCCATGATGGTGATCGTCGGTGCTGGATGCGTGTTGTCTATGACCCAGCGTGCCCCGCTCTTCG
CCGCCGCCTTCGCGCTAGAACTGACTCGTGCTGGAGCGCTAGGGATCCCGGTCGTTGTCGCAGCGGTGATGCTCGGTTGG
ACAGGGTTCGTTCTCGTTAGTAGGCGTGGTCTGGGACTCCACGGACGGATTGGTCGGGCTCCGGGCCATACGTCTGATCC
GCGGTAG

Upstream 100 bases:

>100_bases
CCTACCAGGGTATTGAAGAATTCCTGGAGACGATCTACGTCGCCCTTCCAGCGTGATTCATAGGCCGTGCTCTTAAGGTT
GTGGCGGTAGCGTCTGACTC

Downstream 100 bases:

>100_bases
TGTGAACGCAATGTACCAGCCGCGGTGCGGCGCACCCATATCCAAGGAAGGCACATGACTCAGGACCTGGCTTCAGCAAT
CGCATTCCAGGTGCGATCGA

Product: chloride channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MVTSRIRFVAAVVLTGLASGLIGGLTSELSHLIEVCAFGVPFSSSTTGVGEVVMWRRLVAPIMGALIAGLTWRWLRPFPS
GSITSVRQAIDSPTRLRPVETIVDALAQLVVVGSGSSLGREAAPRQMAALAAQGLSDTFRVDVATRRVVLASAAGAGLAS
VYNVPVAGALYALELTVRPDLRTKRGWGQVGIAGVISVLSTVTAWLLNHDRPIYRSPAATVTGPGLGWMVLVVAVSTVVG
AGMGVLFGEMKRRVPVTSRLWWTVPLGSAGVTAIALAAPQVVGNGQVIVNLVLAHPVAPASLVILLVGKILATTVALRSG
AAGGLLTPSLSAGALVGALVAVVAGIDAPSQIAMMVIVGAGCVLSMTQRAPLFAAAFALELTRAGALGIPVVVAAVMLGW
TGFVLVSRRGLGLHGRIGRAPGHTSDPR

Sequences:

>Translated_428_residues
MVTSRIRFVAAVVLTGLASGLIGGLTSELSHLIEVCAFGVPFSSSTTGVGEVVMWRRLVAPIMGALIAGLTWRWLRPFPS
GSITSVRQAIDSPTRLRPVETIVDALAQLVVVGSGSSLGREAAPRQMAALAAQGLSDTFRVDVATRRVVLASAAGAGLAS
VYNVPVAGALYALELTVRPDLRTKRGWGQVGIAGVISVLSTVTAWLLNHDRPIYRSPAATVTGPGLGWMVLVVAVSTVVG
AGMGVLFGEMKRRVPVTSRLWWTVPLGSAGVTAIALAAPQVVGNGQVIVNLVLAHPVAPASLVILLVGKILATTVALRSG
AAGGLLTPSLSAGALVGALVAVVAGIDAPSQIAMMVIVGAGCVLSMTQRAPLFAAAFALELTRAGALGIPVVVAAVMLGW
TGFVLVSRRGLGLHGRIGRAPGHTSDPR
>Mature_428_residues
MVTSRIRFVAAVVLTGLASGLIGGLTSELSHLIEVCAFGVPFSSSTTGVGEVVMWRRLVAPIMGALIAGLTWRWLRPFPS
GSITSVRQAIDSPTRLRPVETIVDALAQLVVVGSGSSLGREAAPRQMAALAAQGLSDTFRVDVATRRVVLASAAGAGLAS
VYNVPVAGALYALELTVRPDLRTKRGWGQVGIAGVISVLSTVTAWLLNHDRPIYRSPAATVTGPGLGWMVLVVAVSTVVG
AGMGVLFGEMKRRVPVTSRLWWTVPLGSAGVTAIALAAPQVVGNGQVIVNLVLAHPVAPASLVILLVGKILATTVALRSG
AAGGLLTPSLSAGALVGALVAVVAGIDAPSQIAMMVIVGAGCVLSMTQRAPLFAAAFALELTRAGALGIPVVVAAVMLGW
TGFVLVSRRGLGLHGRIGRAPGHTSDPR

Specific function: Unknown

COG id: COG0038

COG function: function code P; Chloride channel protein EriC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the chloride channel (TC 2.A.49) family. ClcB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014743
- InterPro:   IPR001807 [H]

Pfam domain/function: PF00654 Voltage_CLC [H]

EC number: NA

Molecular weight: Translated: 43723; Mature: 43723

Theoretical pI: Translated: 12.07; Mature: 12.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTSRIRFVAAVVLTGLASGLIGGLTSELSHLIEVCAFGVPFSSSTTGVGEVVMWRRLVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
PIMGALIAGLTWRWLRPFPSGSITSVRQAIDSPTRLRPVETIVDALAQLVVVGSGSSLGR
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHEEECCCCCCCC
EAAPRQMAALAAQGLSDTFRVDVATRRVVLASAAGAGLASVYNVPVAGALYALELTVRPD
HHHHHHHHHHHHHCCCCCEEEEHHHHEEEEEECCCCCHHHHHCCCCCCEEEEEEEEECCC
LRTKRGWGQVGIAGVISVLSTVTAWLLNHDRPIYRSPAATVTGPGLGWMVLVVAVSTVVG
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
AGMGVLFGEMKRRVPVTSRLWWTVPLGSAGVTAIALAAPQVVGNGQVIVNLVLAHPVAPA
CCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHCCHHCCCCCEEEEEEHHCCCCHH
SLVILLVGKILATTVALRSGAAGGLLTPSLSAGALVGALVAVVAGIDAPSQIAMMVIVGA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
GCVLSMTQRAPLFAAAFALELTRAGALGIPVVVAAVMLGWTGFVLVSRRGLGLHGRIGRA
CHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCC
PGHTSDPR
CCCCCCCC
>Mature Secondary Structure
MVTSRIRFVAAVVLTGLASGLIGGLTSELSHLIEVCAFGVPFSSSTTGVGEVVMWRRLVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
PIMGALIAGLTWRWLRPFPSGSITSVRQAIDSPTRLRPVETIVDALAQLVVVGSGSSLGR
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHEEECCCCCCCC
EAAPRQMAALAAQGLSDTFRVDVATRRVVLASAAGAGLASVYNVPVAGALYALELTVRPD
HHHHHHHHHHHHHCCCCCEEEEHHHHEEEEEECCCCCHHHHHCCCCCCEEEEEEEEECCC
LRTKRGWGQVGIAGVISVLSTVTAWLLNHDRPIYRSPAATVTGPGLGWMVLVVAVSTVVG
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
AGMGVLFGEMKRRVPVTSRLWWTVPLGSAGVTAIALAAPQVVGNGQVIVNLVLAHPVAPA
CCHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHCCHHCCCCCEEEEEEHHCCCCHH
SLVILLVGKILATTVALRSGAAGGLLTPSLSAGALVGALVAVVAGIDAPSQIAMMVIVGA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
GCVLSMTQRAPLFAAAFALELTRAGALGIPVVVAAVMLGWTGFVLVSRRGLGLHGRIGRA
CHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCC
PGHTSDPR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]