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The map label for this gene is yxjL [H]

Identifier: 50841545

GI number: 50841545

Start: 54681

End: 55337

Strand: Reverse

Name: yxjL [H]

Synonym: PPA0055

Alternate gene names: 50841545

Gene position: 55337-54681 (Counterclockwise)

Preceding gene: 50841546

Following gene: 50841544

Centisome position: 2.16

GC content: 60.43

Gene sequence:

>657_bases
ATGCCCGATCCGATTCGCGTCATCCTCGTCGACGACCAGTCCCTGGTCCGTTCGGGGTTTCGTATGCTCATCGAATCCGA
GGATGACATGGAGGTCGTCTCGGAGGCGTCAAACGGCCTCGAGGCCCTTGACGTGCTACGTCGAATGCCTGTCGACGTCG
CCCTCATGGACATCCGGATGCCGCAGATGGACGGTGTCGAGGCCACTCGACGCATCACGGCGTCCCCACTGGATACCAAG
GTGCTGATTCTGACCACCTTTGACCTCGACGAGTATGTGTACGCCGCTCTCAAGGCCGGCGCCTCGGGGTTCCTGCTCAA
GGATGCCCGCCCCACGGAACTGCTGAGCGCTATCCGCAATGTTGCTGACGGCGACGCTGTCGTCGCACCATCGGCCACCC
GCCGCTTGCTCGACCACGTCGTCCCCACCCTGCCTAACGATCCCAAGGCCGCAGATAAGAGACTGTCGGTCTTGACAGAT
CGCGAGAAGGAAGTGCTGGTGGAGATTGCAAAGGGAGCGACGAACGCCGAAATCGCGCAGACCCTCTACATGGCAGAAGG
AACTGTGAAAACTCACATCGGCCGACTACTATCGAAATTAGAGTGCCGCGACCGGGTTGGCCTCGTGCTGTTTGCCCATG
AGGTCGGCCTTCTTTGA

Upstream 100 bases:

>100_bases
CTGGTGCGGCGACCATTACGACCCAGCGAATCCAGAGATCGACACATTCCTGCACGGCACGCGATCGGTAAGCTTCGACT
GACGAGCAACTGGAGGTGCC

Downstream 100 bases:

>100_bases
GATACCTAATCCGTACTCAATACTGGGCATCATAAACGTCCGTCTTTTTCACGTCACCTAAGGCGTGAGGGGGTGTCGGC
TACTAGTCGATACCCTCTTC

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MPDPIRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRMPVDVALMDIRMPQMDGVEATRRITASPLDTK
VLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRNVADGDAVVAPSATRRLLDHVVPTLPNDPKAADKRLSVLTD
REKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL

Sequences:

>Translated_218_residues
MPDPIRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRMPVDVALMDIRMPQMDGVEATRRITASPLDTK
VLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRNVADGDAVVAPSATRRLLDHVVPTLPNDPKAADKRLSVLTD
REKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL
>Mature_217_residues
PDPIRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRMPVDVALMDIRMPQMDGVEATRRITASPLDTKV
LILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRNVADGDAVVAPSATRRLLDHVVPTLPNDPKAADKRLSVLTDR
EKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL

Specific function: Probable member of the two-component regulatory system yxjM/yxjL [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=219, Percent_Identity=39.2694063926941, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1788222, Length=214, Percent_Identity=36.9158878504673, Blast_Score=127, Evalue=5e-31,
Organism=Escherichia coli, GI1787473, Length=212, Percent_Identity=32.5471698113208, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1790102, Length=196, Percent_Identity=35.7142857142857, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786747, Length=209, Percent_Identity=27.7511961722488, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788712, Length=209, Percent_Identity=24.8803827751196, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082052, Length=119, Percent_Identity=31.9327731092437, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23861; Mature: 23730

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDPIRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRMPVDVALMDIRM
CCCCEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEC
PQMDGVEATRRITASPLDTKVLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRN
CCCCCHHHHHHEECCCCCCEEEEEEEECHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHH
VADGDAVVAPSATRRLLDHVVPTLPNDPKAADKRLSVLTDREKEVLVEIAKGATNAEIAQ
CCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHH
TLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL
HHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
>Mature Secondary Structure 
PDPIRVILVDDQSLVRSGFRMLIESEDDMEVVSEASNGLEALDVLRRMPVDVALMDIRM
CCCEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEEC
PQMDGVEATRRITASPLDTKVLILTTFDLDEYVYAALKAGASGFLLKDARPTELLSAIRN
CCCCCHHHHHHEECCCCCCEEEEEEEECHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHH
VADGDAVVAPSATRRLLDHVVPTLPNDPKAADKRLSVLTDREKEVLVEIAKGATNAEIAQ
CCCCCEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHH
TLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVGLL
HHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]