Click here to switch to the map view.

The map label for this gene is ymzD

Identifier: 50812231

GI number: 50812231

Start: 1780618

End: 1781073

Strand: Reverse

Name: ymzD

Synonym: BSU17060

Alternate gene names: 50812231

Gene position: 1781073-1780618 (Counterclockwise)

Preceding gene: 16078769

Following gene: 16078659

Centisome position: 42.25

GC content: 35.75

Gene sequence:

>456_bases
ATGAACCAAAAAGAACAGAACGAGCACTCTAAAGATTTTAACCTGAGATCAAAATTAATCGGAATTGTATCTATTACTTT
TATCGCGGCCATCGCGCTTGCAGTCATCTTCGGCGGCTTTTTCTTCGGGATGAAAGGCTTATTCTCCATACTTGGCATCA
CATACGCTTCCAATCAAACATTAGCTTTATTTATTTTAGCCTGCTTTGCTGTAGGTTTAATCATAGACCCACTCACAAAG
ATTATCTCTATCATTTTGGCAAAATCACTTTCATTGAAAAAGACTGCACTTTTTGCTTTTATACTGTATTTTATCAGCAA
TCTTATAACGATCTGTTTTGCAGATTACTTTATGCAGTCTATTTATATTCCAGATGTCTTGCTTGTTGTGATATCAGCTT
TCATGGCTATCATTGAACTTGCTTTTGATAACCAGCCTAATAGAGAAGCAGCTTAA

Upstream 100 bases:

>100_bases
ATATGCTATACTATTTTCGTCAGAAAACAGACTTATAGATATTTTGGGCTGATTCAAGGGTGCTGTTTGTATGAGTAAGC
AGGTGAAGGGAGTGTCATAC

Downstream 100 bases:

>100_bases
AGCCGATGGCAGATATGGAAAATTCATAACACCCTATATTTGGACATCACCAGTTATATAAACGAAAAAATCTCCCTGTT
CACACGAACAGGGAGCAAAA

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MNQKEQNEHSKDFNLRSKLIGIVSITFIAAIALAVIFGGFFFGMKGLFSILGITYASNQTLALFILACFAVGLIIDPLTK
IISIILAKSLSLKKTALFAFILYFISNLITICFADYFMQSIYIPDVLLVVISAFMAIIELAFDNQPNREAA

Sequences:

>Translated_151_residues
MNQKEQNEHSKDFNLRSKLIGIVSITFIAAIALAVIFGGFFFGMKGLFSILGITYASNQTLALFILACFAVGLIIDPLTK
IISIILAKSLSLKKTALFAFILYFISNLITICFADYFMQSIYIPDVLLVVISAFMAIIELAFDNQPNREAA
>Mature_151_residues
MNQKEQNEHSKDFNLRSKLIGIVSITFIAAIALAVIFGGFFFGMKGLFSILGITYASNQTLALFILACFAVGLIIDPLTK
IISIILAKSLSLKKTALFAFILYFISNLITICFADYFMQSIYIPDVLLVVISAFMAIIELAFDNQPNREAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YMZD_BACSU (Q7WY71)

Other databases:

- EMBL:   AL009126
- RefSeq:   YP_054578.1
- ProteinModelPortal:   Q7WY71
- EnsemblBacteria:   EBBACT00000003019
- GeneID:   2914256
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU17060
- GenoList:   BSU17060
- GeneTree:   EBGT00050000002981
- OMA:   ITICFAD
- ProtClustDB:   CLSK928130
- BioCyc:   BSUB:BSU17060-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16687; Mature: 16687

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf096a30)-; HASH(0xf397808)-; HASH(0xec935d4)-; HASH(0xf7357a8)-;

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQKEQNEHSKDFNLRSKLIGIVSITFIAAIALAVIFGGFFFGMKGLFSILGITYASNQT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LALFILACFAVGLIIDPLTKIISIILAKSLSLKKTALFAFILYFISNLITICFADYFMQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYIPDVLLVVISAFMAIIELAFDNQPNREAA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
>Mature Secondary Structure
MNQKEQNEHSKDFNLRSKLIGIVSITFIAAIALAVIFGGFFFGMKGLFSILGITYASNQT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LALFILACFAVGLIIDPLTKIISIILAKSLSLKKTALFAFILYFISNLITICFADYFMQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYIPDVLLVVISAFMAIIELAFDNQPNREAA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377