Click here to switch to the map view.

The map label for this gene is rimM [H]

Identifier: 50365358

GI number: 50365358

Start: 636506

End: 637006

Strand: Reverse

Name: rimM [H]

Synonym: Mfl541

Alternate gene names: 50365358

Gene position: 637006-636506 (Counterclockwise)

Preceding gene: 50365359

Following gene: 50365357

Centisome position: 80.31

GC content: 23.75

Gene sequence:

>501_bases
ATGGAAAATAAAAATTTATTATCTATTGGAAAAATTGTCAACACATTTGGTATTAAAGGAGCTGTGAAGATAGCTTTAGA
AAAAAGCATTGAAGTTAATGACATAAATGGAATTAAACTTTTATTTATTGAAAACACAAACAATGTAATTATTCCAAAAC
AAGTTGAATCAATAAGTATGCAAAAAAGTCATTTAGTTGTTTACTTTAAAGAACATAATCATATTAATGAGGTTGAAATC
TTTAAAGGCAAAAAAGTTAAATATTTAAATGACAATGATGCATTTTCAATATTCTATGATTTAACTTACTATTCTGTTGT
GTATAACAAACAAAATGGTAAAGTTATTGAAACAATGTTTAATGGTAATCATGATTTAGTCAAAGTACTATTAGAAAATG
AAGAAAAAGCATTTTGAGTACCTTTGGTTGATGTGTACACTAACAACATTGATGATGAATCTAGAATTATAACTTTAAAA
AACATTGAAGGATTAAAATAA

Upstream 100 bases:

>100_bases
AATGAAAGCATTACACGAAGCAAAACTTGCTAACAAAAAATAATTCGAACAGAATTAAAAATTTGTTTTAAAACCACTTT
AAATTTAGCAAGGAAGTAAA

Downstream 100 bases:

>100_bases
TGAAATATTCAATTCTAACGTTATTCCCAAATATTATTAAATCTTATATTTCTGAATCAATTATTAAAAAAGCTCTAGAG
CGTGAAAAGATTGAATTAGA

Product: 16S rRNA processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MENKNLLSIGKIVNTFGIKGAVKIALEKSIEVNDINGIKLLFIENTNNVIIPKQVESISMQKSHLVVYFKEHNHINEVEI
FKGKKVKYLNDNDAFSIFYDLTYYSVVYNKQNGKVIETMFNGNHDLVKVLLENEEKAFWVPLVDVYTNNIDDESRIITLK
NIEGLK

Sequences:

>Translated_166_residues
MENKNLLSIGKIVNTFGIKGAVKIALEKSIEVNDINGIKLLFIENTNNVIIPKQVESISMQKSHLVVYFKEHNHINEVEI
FKGKKVKYLNDNDAFSIFYDLTYYSVVYNKQNGKVIETMFNGNHDLVKVLLENEEKAF*VPLVDVYTNNIDDESRIITLK
NIEGLK
>Mature_166_residues
MENKNLLSIGKIVNTFGIKGAVKIALEKSIEVNDINGIKLLFIENTNNVIIPKQVESISMQKSHLVVYFKEHNHINEVEI
FKGKKVKYLNDNDAFSIFYDLTYYSVVYNKQNGKVIETMFNGNHDLVKVLLENEEKAF*VPLVDVYTNNIDDESRIITLK
NIEGLK

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 18906; Mature: 18906

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKNLLSIGKIVNTFGIKGAVKIALEKSIEVNDINGIKLLFIENTNNVIIPKQVESISM
CCCCCEEEHHHHHHHCCCCCEEEEEEECCEEEECCCCEEEEEEECCCCEEECCCCCCCEE
QKSHLVVYFKEHNHINEVEIFKGKKVKYLNDNDAFSIFYDLTYYSVVYNKQNGKVIETMF
CCCEEEEEEECCCCCCEEEEECCCEEEEECCCCEEEEEEEEEEEEEEEECCCCEEEEEEE
NGNHDLVKVLLENEEKAFVPLVDVYTNNIDDESRIITLKNIEGLK
CCCHHEEEEEECCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MENKNLLSIGKIVNTFGIKGAVKIALEKSIEVNDINGIKLLFIENTNNVIIPKQVESISM
CCCCCEEEHHHHHHHCCCCCEEEEEEECCEEEECCCCEEEEEEECCCCEEECCCCCCCEE
QKSHLVVYFKEHNHINEVEIFKGKKVKYLNDNDAFSIFYDLTYYSVVYNKQNGKVIETMF
CCCEEEEEEECCCCCCEEEEECCCEEEEECCCCEEEEEEEEEEEEEEEECCCCEEEEEEE
NGNHDLVKVLLENEEKAFVPLVDVYTNNIDDESRIITLKNIEGLK
CCCHHEEEEEECCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA