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The map label for this gene is yjfH [C]

Identifier: 50364903

GI number: 50364903

Start: 110301

End: 111029

Strand: Direct

Name: yjfH [C]

Synonym: Mfl088

Alternate gene names: 50364903

Gene position: 110301-111029 (Clockwise)

Preceding gene: 50364902

Following gene: 50364904

Centisome position: 13.91

GC content: 25.79

Gene sequence:

>729_bases
ATGGAGAATTTAAGTTTAATTTACGGAAAACATGCAGTTAATGAATTTATAAAAAAGCACCCTAATTTAATTAAAAAAAT
ATATATTTCAAGTGACTTTAAAATAGATAAATCAAATAATGAATTTCAGATTTTAAAAGTTGATTTAAAAAAAATAGAAA
ATCTTGTTGGTAATGAGGCTAATCATCAAGGCATTGTTGCAGAGGTTAAAGAATTTAATTACAAACCATTTGGTGAAGCA
CTAAATCAAATGAAAGACGATGAACCTAAATTAGTATTGATATTAGATCAAATTCAGGACCCGTATAATTTTGGAGCTAT
AATAAGAAGTTCTAGTTTATTAGGTGTTGATCAAATTGTTATTTTAGACCATAAGCAAGTTTTTGTTAATTCAACAGTTG
TTAAAACATCTGCTGGAACAGTTTATGATATGAACATTAGTAAAGTTACAAATTTAAGCAATGCTATTAAAGATCTACAA
AAAAATGGGTTTTGAATATACTCAACTCATTTAAATTCTGAATCTAATGATATGAGAAAAGTTGATTTTGCCAATAGGAC
TGCTATAGTAATTGGAAATGAACATAATGGAGTTAGTGATTTAGTAATGAAAAATAGTGATATGAATGTATTTATACCCT
CAACAAATACTATAGATTCGTATAATGCAAATGTTGCAACTTCTTTAATTTTGTATCATGTTGCTAACTATATTGGAAAA
CTTAAATAA

Upstream 100 bases:

>100_bases
CAAAATTTATTTTTATTATGAAAAAAAATAGTAAGTGAAAAAGATTTTGAAAAAGCAGACGAAATAAGAAAAGTATTAAT
TAGTAAAGGGATTTTATAAA

Downstream 100 bases:

>100_bases
TAAATGTATAATATTCATAGTTATTAGGAGGTTAACCTCCTTTTTAATTAGACAAAGCTTGGTTGAGGAGGGTTAGTATG
CATAAAACAAAATCTACAAG

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MENLSLIYGKHAVNEFIKKHPNLIKKIYISSDFKIDKSNNEFQILKVDLKKIENLVGNEANHQGIVAEVKEFNYKPFGEA
LNQMKDDEPKLVLILDQIQDPYNFGAIIRSSSLLGVDQIVILDHKQVFVNSTVVKTSAGTVYDMNISKVTNLSNAIKDLQ
KNGFWIYSTHLNSESNDMRKVDFANRTAIVIGNEHNGVSDLVMKNSDMNVFIPSTNTIDSYNANVATSLILYHVANYIGK
LK

Sequences:

>Translated_242_residues
MENLSLIYGKHAVNEFIKKHPNLIKKIYISSDFKIDKSNNEFQILKVDLKKIENLVGNEANHQGIVAEVKEFNYKPFGEA
LNQMKDDEPKLVLILDQIQDPYNFGAIIRSSSLLGVDQIVILDHKQVFVNSTVVKTSAGTVYDMNISKVTNLSNAIKDLQ
KNGF*IYSTHLNSESNDMRKVDFANRTAIVIGNEHNGVSDLVMKNSDMNVFIPSTNTIDSYNANVATSLILYHVANYIGK
LK
>Mature_242_residues
MENLSLIYGKHAVNEFIKKHPNLIKKIYISSDFKIDKSNNEFQILKVDLKKIENLVGNEANHQGIVAEVKEFNYKPFGEA
LNQMKDDEPKLVLILDQIQDPYNFGAIIRSSSLLGVDQIVILDHKQVFVNSTVVKTSAGTVYDMNISKVTNLSNAIKDLQ
KNGF*IYSTHLNSESNDMRKVDFANRTAIVIGNEHNGVSDLVMKNSDMNVFIPSTNTIDSYNANVATSLILYHVANYIGK
LK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=212, Percent_Identity=26.4150943396226, Blast_Score=94, Evalue=9e-20,
Organism=Escherichia coli, GI1790623, Length=238, Percent_Identity=25.6302521008403, Blast_Score=97, Evalue=6e-22,
Organism=Escherichia coli, GI1790083, Length=164, Percent_Identity=26.219512195122, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788935, Length=235, Percent_Identity=21.2765957446809, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27063; Mature: 27063

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLSLIYGKHAVNEFIKKHPNLIKKIYISSDFKIDKSNNEFQILKVDLKKIENLVGNEA
CCCCEEEECHHHHHHHHHHCHHHHHEEEECCCEEEECCCCCEEEEEEEHHHHHHHHCCCC
NHQGIVAEVKEFNYKPFGEALNQMKDDEPKLVLILDQIQDPYNFGAIIRSSSLLGVDQIV
CCCCHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHEECCCCCCCEEEE
ILDHKQVFVNSTVVKTSAGTVYDMNISKVTNLSNAIKDLQKNGFIYSTHLNSESNDMRKV
EEECCEEEEECEEEEECCCEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEE
DFANRTAIVIGNEHNGVSDLVMKNSDMNVFIPSTNTIDSYNANVATSLILYHVANYIGKL
ECCCCEEEEEECCCCCHHHHEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCC
K
C
>Mature Secondary Structure
MENLSLIYGKHAVNEFIKKHPNLIKKIYISSDFKIDKSNNEFQILKVDLKKIENLVGNEA
CCCCEEEECHHHHHHHHHHCHHHHHEEEECCCEEEECCCCCEEEEEEEHHHHHHHHCCCC
NHQGIVAEVKEFNYKPFGEALNQMKDDEPKLVLILDQIQDPYNFGAIIRSSSLLGVDQIV
CCCCHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHEECCCCCCCEEEE
ILDHKQVFVNSTVVKTSAGTVYDMNISKVTNLSNAIKDLQKNGFIYSTHLNSESNDMRKV
EEECCEEEEECEEEEECCCEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEE
DFANRTAIVIGNEHNGVSDLVMKNSDMNVFIPSTNTIDSYNANVATSLILYHVANYIGKL
ECCCCEEEEEECCCCCHHHHEEECCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA