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The map label for this gene is ydcR [H]

Identifier: 50086561

GI number: 50086561

Start: 3525020

End: 3526432

Strand: Reverse

Name: ydcR [H]

Synonym: ACIAD3613

Alternate gene names: 50086561

Gene position: 3526432-3525020 (Counterclockwise)

Preceding gene: 50086563

Following gene: 50086558

Centisome position: 97.99

GC content: 43.88

Gene sequence:

>1413_bases
ATGACGTTTTACTATCAGCGACTGGCTCAACAGATTGCGCACAAAATTTATCAGCAACAATTATTACCTCAGCAAAAGTT
AAGTTCATTGCGTGATTTTGCGACTCAGCATCAAGTGAGTATCAGCACTGCAAAAAGTTGTTATGAATGGTTAGAGGCGC
AGGGTTTGATCTACGTCAAACCCAAGTCTGGCTATTTCGTTAAACCGAAAAGTAATGTCAGCCGTTTGCCTGTGAGTCCA
GAATTTGAGTCGATGCCACGTCAGGTTTCAAATCTGATGCTACAGAATCAGATTCAGGAGGCTTCCATCCAGAATCATCT
GATTCCCTTTGGTGCGATTCAACTCAGTCCAGAATTGGTTCCAATTGATGGCTTACGTCGCTCGATACAAAGAGCCTTGA
AATATTGCAAACCCGAAGATTTTTTATATTGTGAAAAGCAGGGCCATTTGCGTTTACGTCAGGCACTGAGTGAACATTGG
CGCGAAGATGGCATTTATGTGGCGCCAAACGATATCTTTATTACCAATGGTTGCATGCCTGCATTGTCATTATTGATTCA
ACAGTTAAGTCGGGAAGGGGATAGCATCCTGATTCCAACGCCAACTTTTAACGGACAGCTTCAATTATTGGCGGGCCTCA
ATCGGCACATTATTGAGATTCCAGCAGACCATACGGGCATTGATCTACTCCGCCTTGAACAGGCCATGCAGATGCACCAG
CCGAAATTATGTTTACTCACCGCCAATTATCAAAATCCGCTGGGTTATTGTCTGGCCGATGAAGATAAGCAAAAAATTGC
GCAGTTAGCGGCACGCTATCAATGTATTATTTTGGAAGATGATATTTACGCAGAATGTAGTCATCATGGTCAACGGCCAC
GACCAATTAAGTATTGGGATGAGGCCGGCTATGTGATTTGGGTCAGTTCGGTATCAAAATCTTTATCCAGTGCTTATCGG
GTCGGCTGGTTTTGTATCGGGTCACAACTCGAACCTATGCGTCCACGATTCCTGTCACACAATATGACCGTTAATACCCC
ACTACAATTGGCGCTGGCCGATTTTATTTTTAGTCGTGGCTATCGTAGGCATCTTAACCAATTACATCCACGCTTGATGC
AACAGGTCGAAGCATATCGCGATGTCATTTTAAATGCGTTTGCGCCTTTAACCATTGGTTTAAGTCAGCCACAAGGCGGC
TATGCCTTATGGCTTGAACTACCAGACAATATCAATAGTGTGACTTTATATGAGGTTGCCCAGCAACAGGGCATTAGTAT
TGTGCCAGGTACGGTATTTGGTGAAGATCAGCGTTATGGACATTTTATCCGGCTGAGTGTCGGACATGCTTTGCAAAACG
AGCATCATGCAGCGATTATTTTTCTAGCAGATTGGGTCAAACAGCATTGTTAA

Upstream 100 bases:

>100_bases
ATTTTTTCATGATGTTATCTCGTATCCGTTGCTTTTTAAAGATTAATCGGTTTGTATAAACCATTACAGATACAGATTTT
TATAAAAAAGAAGTACAGAT

Downstream 100 bases:

>100_bases
AATCTGGCAATCAAAACTGATTGCCAGATTGACTACATAAAATTAAAAATCGGCTTTAAGTACAATCCGATAACGTGCTT
GACCCGAATGTAAGCGTTCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MTFYYQRLAQQIAHKIYQQQLLPQQKLSSLRDFATQHQVSISTAKSCYEWLEAQGLIYVKPKSGYFVKPKSNVSRLPVSP
EFESMPRQVSNLMLQNQIQEASIQNHLIPFGAIQLSPELVPIDGLRRSIQRALKYCKPEDFLYCEKQGHLRLRQALSEHW
REDGIYVAPNDIFITNGCMPALSLLIQQLSREGDSILIPTPTFNGQLQLLAGLNRHIIEIPADHTGIDLLRLEQAMQMHQ
PKLCLLTANYQNPLGYCLADEDKQKIAQLAARYQCIILEDDIYAECSHHGQRPRPIKYWDEAGYVIWVSSVSKSLSSAYR
VGWFCIGSQLEPMRPRFLSHNMTVNTPLQLALADFIFSRGYRRHLNQLHPRLMQQVEAYRDVILNAFAPLTIGLSQPQGG
YALWLELPDNINSVTLYEVAQQQGISIVPGTVFGEDQRYGHFIRLSVGHALQNEHHAAIIFLADWVKQHC

Sequences:

>Translated_470_residues
MTFYYQRLAQQIAHKIYQQQLLPQQKLSSLRDFATQHQVSISTAKSCYEWLEAQGLIYVKPKSGYFVKPKSNVSRLPVSP
EFESMPRQVSNLMLQNQIQEASIQNHLIPFGAIQLSPELVPIDGLRRSIQRALKYCKPEDFLYCEKQGHLRLRQALSEHW
REDGIYVAPNDIFITNGCMPALSLLIQQLSREGDSILIPTPTFNGQLQLLAGLNRHIIEIPADHTGIDLLRLEQAMQMHQ
PKLCLLTANYQNPLGYCLADEDKQKIAQLAARYQCIILEDDIYAECSHHGQRPRPIKYWDEAGYVIWVSSVSKSLSSAYR
VGWFCIGSQLEPMRPRFLSHNMTVNTPLQLALADFIFSRGYRRHLNQLHPRLMQQVEAYRDVILNAFAPLTIGLSQPQGG
YALWLELPDNINSVTLYEVAQQQGISIVPGTVFGEDQRYGHFIRLSVGHALQNEHHAAIIFLADWVKQHC
>Mature_469_residues
TFYYQRLAQQIAHKIYQQQLLPQQKLSSLRDFATQHQVSISTAKSCYEWLEAQGLIYVKPKSGYFVKPKSNVSRLPVSPE
FESMPRQVSNLMLQNQIQEASIQNHLIPFGAIQLSPELVPIDGLRRSIQRALKYCKPEDFLYCEKQGHLRLRQALSEHWR
EDGIYVAPNDIFITNGCMPALSLLIQQLSREGDSILIPTPTFNGQLQLLAGLNRHIIEIPADHTGIDLLRLEQAMQMHQP
KLCLLTANYQNPLGYCLADEDKQKIAQLAARYQCIILEDDIYAECSHHGQRPRPIKYWDEAGYVIWVSSVSKSLSSAYRV
GWFCIGSQLEPMRPRFLSHNMTVNTPLQLALADFIFSRGYRRHLNQLHPRLMQQVEAYRDVILNAFAPLTIGLSQPQGGY
ALWLELPDNINSVTLYEVAQQQGISIVPGTVFGEDQRYGHFIRLSVGHALQNEHHAAIIFLADWVKQHC

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=368, Percent_Identity=27.1739130434783, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI33469970, Length=368, Percent_Identity=27.1739130434783, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI4507369, Length=358, Percent_Identity=23.1843575418994, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI1787710, Length=446, Percent_Identity=31.390134529148, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1790797, Length=461, Percent_Identity=30.1518438177874, Blast_Score=218, Evalue=5e-58,
Organism=Escherichia coli, GI1788722, Length=311, Percent_Identity=22.8295819935691, Blast_Score=74, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21356535, Length=361, Percent_Identity=24.3767313019391, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI18859735, Length=346, Percent_Identity=24.2774566473988, Blast_Score=73, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53744; Mature: 53612

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFYYQRLAQQIAHKIYQQQLLPQQKLSSLRDFATQHQVSISTAKSCYEWLEAQGLIYVK
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
PKSGYFVKPKSNVSRLPVSPEFESMPRQVSNLMLQNQIQEASIQNHLIPFGAIQLSPELV
CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEE
PIDGLRRSIQRALKYCKPEDFLYCEKQGHLRLRQALSEHWREDGIYVAPNDIFITNGCMP
CHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCEEECCCCEEEECCCHH
ALSLLIQQLSREGDSILIPTPTFNGQLQLLAGLNRHIIEIPADHTGIDLLRLEQAMQMHQ
HHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHCC
PKLCLLTANYQNPLGYCLADEDKQKIAQLAARYQCIILEDDIYAECSHHGQRPRPIKYWD
CCEEEEEECCCCCCEEEECCCHHHHHHHHHHCEEEEEEECCHHHHHHHCCCCCCCCCEEC
EAGYVIWVSSVSKSLSSAYRVGWFCIGSQLEPMRPRFLSHNMTVNTPLQLALADFIFSRG
CCCEEEEHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHCC
YRRHLNQLHPRLMQQVEAYRDVILNAFAPLTIGLSQPQGGYALWLELPDNINSVTLYEVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEECCCCCCCEEHHHHH
QQQGISIVPGTVFGEDQRYGHFIRLSVGHALQNEHHAAIIFLADWVKQHC
HHCCCEEECCCEECCCCCCCCEEEEEECHHHCCCCCEEEEEHHHHHHHCC
>Mature Secondary Structure 
TFYYQRLAQQIAHKIYQQQLLPQQKLSSLRDFATQHQVSISTAKSCYEWLEAQGLIYVK
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
PKSGYFVKPKSNVSRLPVSPEFESMPRQVSNLMLQNQIQEASIQNHLIPFGAIQLSPELV
CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEE
PIDGLRRSIQRALKYCKPEDFLYCEKQGHLRLRQALSEHWREDGIYVAPNDIFITNGCMP
CHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCEEECCCCEEEECCCHH
ALSLLIQQLSREGDSILIPTPTFNGQLQLLAGLNRHIIEIPADHTGIDLLRLEQAMQMHQ
HHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHCC
PKLCLLTANYQNPLGYCLADEDKQKIAQLAARYQCIILEDDIYAECSHHGQRPRPIKYWD
CCEEEEEECCCCCCEEEECCCHHHHHHHHHHCEEEEEEECCHHHHHHHCCCCCCCCCEEC
EAGYVIWVSSVSKSLSSAYRVGWFCIGSQLEPMRPRFLSHNMTVNTPLQLALADFIFSRG
CCCEEEEHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHCC
YRRHLNQLHPRLMQQVEAYRDVILNAFAPLTIGLSQPQGGYALWLELPDNINSVTLYEVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEECCCCCCCEEHHHHH
QQQGISIVPGTVFGEDQRYGHFIRLSVGHALQNEHHAAIIFLADWVKQHC
HHCCCEEECCCEECCCCCCCCEEEEEECHHHCCCCCEEEEEHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]