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The map label for this gene is nusB

Identifier: 50086525

GI number: 50086525

Start: 3494915

End: 3495364

Strand: Direct

Name: nusB

Synonym: ACIAD3572

Alternate gene names: 50086525

Gene position: 3494915-3495364 (Clockwise)

Preceding gene: 50086524

Following gene: 50086526

Centisome position: 97.12

GC content: 44.89

Gene sequence:

>450_bases
ATGTCGCAAACACTCCAAGCCGCTTATGCAGCGAAACGCAAAGCACGTCGTTTTGCTGTACAAGGCATTTATGAATGGCA
AATGAGCCGTAACCCAGTGCATGAAATTGAAGCGCGTACTCGTGTTGAAAATGCAATGCACAAGGTCGATCTTGGCTATT
ACCATGAATTGCTCACGCAAGTGGTTGCACAACATGAAACATTGGATACGTTACTGGTTCCGGTACTTGACCGTGAATTG
AATGCTCTGGATGGCGTCGAGTTAGCAACCTTACGTTTAGGTGCATATGAGCTTCGAGACCATCTCGAAATTCCTTATCG
TGTTGTTCTAGACGAAGCCATCGAACTCGCTAAACACTTTGGTGGGGCTGATAGCCACAAATACATCAATGGTGTACTTG
ATCGTTTAGCTTCAAGATTACGCGAAGCTGAAAAACAACAAGCCAACTAA

Upstream 100 bases:

>100_bases
ACAAGCCATTGAGCGTTCAGGTACAAAAGCAGGAAATAAAGGTTCTGAAGCAGCCTTAACTGCAATTGAAATGGTTAATC
TGTTAAAGGCAATCTAAAGC

Downstream 100 bases:

>100_bases
GACTTGTTGCACATATGGCTGAGTTTTCTGTTATTGACCAGTATTTTTCCCGTTCTTTATTGCAAGACGAGGAACTTGGT
GTCGGCGACGACTCAGCCTT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQVVAQHETLDTLLVPVLDREL
NALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLASRLREAEKQQAN

Sequences:

>Translated_149_residues
MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQVVAQHETLDTLLVPVLDREL
NALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLASRLREAEKQQAN
>Mature_148_residues
SQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQVVAQHETLDTLLVPVLDRELN
ALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHFGGADSHKYINGVLDRLASRLREAEKQQAN

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=127, Percent_Identity=44.8818897637795, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_ACIAD (Q6F6V2)

Other databases:

- EMBL:   CR543861
- RefSeq:   YP_048035.1
- HSSP:   P0A780
- ProteinModelPortal:   Q6F6V2
- SMR:   Q6F6V2
- STRING:   Q6F6V2
- GeneID:   2879673
- GenomeReviews:   CR543861_GR
- KEGG:   aci:ACIAD3572
- NMPDR:   fig|62977.3.peg.3228
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   IPYKVVI
- PhylomeDB:   Q6F6V2
- ProtClustDB:   PRK00202
- BioCyc:   ASP62977:ACIAD3572-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 17062; Mature: 16930

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
GGADSHKYINGVLDRLASRLREAEKQQAN
CCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQTLQAAYAAKRKARRFAVQGIYEWQMSRNPVHEIEARTRVENAMHKVDLGYYHELLTQ
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVAQHETLDTLLVPVLDRELNALDGVELATLRLGAYELRDHLEIPYRVVLDEAIELAKHF
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
GGADSHKYINGVLDRLASRLREAEKQQAN
CCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA