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The map label for this gene is rimM

Identifier: 50086297

GI number: 50086297

Start: 3218362

End: 3218910

Strand: Reverse

Name: rimM

Synonym: ACIAD3312

Alternate gene names: 50086297

Gene position: 3218910-3218362 (Counterclockwise)

Preceding gene: 50086298

Following gene: 50086296

Centisome position: 89.45

GC content: 44.26

Gene sequence:

>549_bases
ATGACACCAACACAGAATGTTCCCGAAGATCGTATTCAGATTGGACAGTTACGTTCAGCATATGGATTAAATGGGTGGCT
CTGGGTGTATTCCAATACAGAACCCATGAGCAATATGTTTGACTACCTGCCTTGGTTTATTGAAACCAAAGCAGGCTGGC
AAACAGTAGATGTAAAACGTTGGAAACCACATGGCAAAGGTCTGGTCGTTTCGCTGAAAAATGTGAGTGATCGCAATGCA
GCAGAAAGCCTGATTGGATCGACAATCTGGGTTGCCAAGTCTCAGCTTCCTAAAACGGATGTTGATGAATACTACTGGTC
AGATTTAAAAGGCTTAACGGTGTTAGGTCTTGATGAAGAAGAGCAGGAAGTCAATCTTGGTCAAATTCATGAATTGTTTG
AAACTGGCGCTAATGATGTGATGGTGGTCCGTGCCACAGCAGACAGTGTGGATGCTGAAGAGCGCATGATCCCATGGCAT
AAAGATGTGGTACAACGGGTTGATCTGGAAGCAGGCCGTATTTATGTCAATTGGGGCGTAGATTACTAA

Upstream 100 bases:

>100_bases
TGGGTATCTCAAGGTGCTCAACCGTCTGAGCGTGTTGCTTCTTTAGCTGCTCAAGCTAAAAAAGCTGCGACTGCTGCATA
AGTTTTGTAGTAGGTAGCCC

Downstream 100 bases:

>100_bases
TCCACTTGATGGATGGCAAACGCAGTTGGAAAATATAGGAGTCTGCGATGTTTTTTGCAGTCATTACACTTTTTCCAGAA
ATGTTTGAGGCAATCACTGC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MTPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGKGLVVSLKNVSDRNA
AESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNLGQIHELFETGANDVMVVRATADSVDAEERMIPWH
KDVVQRVDLEAGRIYVNWGVDY

Sequences:

>Translated_182_residues
MTPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGKGLVVSLKNVSDRNA
AESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNLGQIHELFETGANDVMVVRATADSVDAEERMIPWH
KDVVQRVDLEAGRIYVNWGVDY
>Mature_181_residues
TPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKRWKPHGKGLVVSLKNVSDRNAA
ESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEEEQEVNLGQIHELFETGANDVMVVRATADSVDAEERMIPWHK
DVVQRVDLEAGRIYVNWGVDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=177, Percent_Identity=39.5480225988701, Blast_Score=139, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_ACIAD (Q6F7I0)

Other databases:

- EMBL:   CR543861
- RefSeq:   YP_047807.1
- PDB:   2QGG
- PDBsum:   2QGG
- ProteinModelPortal:   Q6F7I0
- SMR:   Q6F7I0
- STRING:   Q6F7I0
- GeneID:   2879526
- GenomeReviews:   CR543861_GR
- KEGG:   aci:ACIAD3312
- NMPDR:   fig|62977.3.peg.3000
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   Q6F7I0
- ProtClustDB:   PRK00122
- BioCyc:   ASP62977:ACIAD3312-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20819; Mature: 20687

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKR
CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCEEECCCCCEEEEEEE
WKPHGKGLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEE
CCCCCCEEEEEECCCCCCHHHHHHHHHHHEEECCCCCCCCCHHHHHHCCCCCEEEECCCC
EQEVNLGQIHELFETGANDVMVVRATADSVDAEERMIPWHKDVVQRVDLEAGRIYVNWGV
HHHCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHCCCCCCEEEEEECC
DY
CC
>Mature Secondary Structure 
TPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWFIETKAGWQTVDVKR
CCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCEEECCCCCEEEEEEE
WKPHGKGLVVSLKNVSDRNAAESLIGSTIWVAKSQLPKTDVDEYYWSDLKGLTVLGLDEE
CCCCCCEEEEEECCCCCCHHHHHHHHHHHEEECCCCCCCCCHHHHHHCCCCCEEEECCCC
EQEVNLGQIHELFETGANDVMVVRATADSVDAEERMIPWHKDVVQRVDLEAGRIYVNWGV
HHHCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCHHHHHHHHCCCCCCEEEEEECC
DY
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA