BacMap

Definition	Acinetobacter sp. ADP1 chromosome, complete genome.
Accession	NC_005966
Length	3,598,621

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The map label for this gene is ygcW [C]

Identifier: 50086284

GI number: 50086284

Start: 3206031

End: 3206837

Strand: Reverse

Name: ygcW [C]

Synonym: ACIAD3298

Alternate gene names: 50086284

Gene position: 3206837-3206031 (Counterclockwise)

Preceding gene: 50086285

Following gene: 50086283

Centisome position: 89.11

GC content: 33.83

Gene sequence:

>807_bases
ATGCAAGTAAATTCCGTGCAGATAAAAAACGCTACAGCAATCGTAACTGGTGCTTCTTCAGGTATCGGTTTGGCTTTCGC
AAGCCTTCTAGCACAAAAGGGTTACAATCTTTTACTTATAGCAAGAAATATAAATAAATTGAATGATTTAGCAAAAACTC
TATCAACACAATATGATACTCAATGCAATGTATTAAGCATTGATTTATCAGAGGAAAATGCCTCTAAAAAGGTTTTGGAA
TATATAATAACAAATAATTTAAATATTTCTGTGTTGATAAATAATGCGGGTTTTTCGGGTAATTATAAATTTTTAGAAGC
TGATTGGTCGCAACTTTCTAAAGAACTGAATGTAATGTCGATTGCAGTAACCGAACTATGTTATTTGATAGCGCCTCTAA
TGGAAAAAAATAGTTGGGGCAGAATTATTAATGTTTCATCGGGTGCAGCATATCTTCCACCAACTCAAAGTCTGTTGTAC
ACAGGATTAAAAAGTTATGTTTTGAATTTTTCGCAATCTTTAGACATGGAGCTTAAGCCTAAAGGAATAAACGTAACGGC
ATTATGCCCTGGTTTCACGAGAAGCGAATTTCACAATACAATGGGGACGAATAAACAAGTGAGTAAGGTTCCAAACTTTT
TATGGCAAGCTCCTGATCAAGTTGCTTTAGAAGGTTGGCATGCTGTTATGAAAGGTCATCCAGTGTGTATCCCAGGATTA
ATTAATAAGATCATTATCTCAACATCCAGACATTTACCATTGAATCTTCAATATAATTTAGGGAAATTAATGAATCCTTT
TAAATAG

Upstream 100 bases:

>100_bases
TTTCTTCCAAATTTTTAGAGTTAAGAGCGTAATTGCAATTTTCTTTCATCTGATAGCAAGTAATAATCATAAGTAAATAT
TTTTAAAAAAGTAGATTGAT

Downstream 100 bases:

>100_bases
TGACTATGTATATACTTGATTGTTAAAATTTTCTTCAATATTTAGGCTTTATGAATATATCTGTTGATCATAAAATAGCT
TGATCAATTTCTTGCTCCCT

Product: short-chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MQVNSVQIKNATAIVTGASSGIGLAFASLLAQKGYNLLLIARNINKLNDLAKTLSTQYDTQCNVLSIDLSEENASKKVLE
YIITNNLNISVLINNAGFSGNYKFLEADWSQLSKELNVMSIAVTELCYLIAPLMEKNSWGRIINVSSGAAYLPPTQSLLY
TGLKSYVLNFSQSLDMELKPKGINVTALCPGFTRSEFHNTMGTNKQVSKVPNFLWQAPDQVALEGWHAVMKGHPVCIPGL
INKIIISTSRHLPLNLQYNLGKLMNPFK

Sequences:

>Translated_268_residues
MQVNSVQIKNATAIVTGASSGIGLAFASLLAQKGYNLLLIARNINKLNDLAKTLSTQYDTQCNVLSIDLSEENASKKVLE
YIITNNLNISVLINNAGFSGNYKFLEADWSQLSKELNVMSIAVTELCYLIAPLMEKNSWGRIINVSSGAAYLPPTQSLLY
TGLKSYVLNFSQSLDMELKPKGINVTALCPGFTRSEFHNTMGTNKQVSKVPNFLWQAPDQVALEGWHAVMKGHPVCIPGL
INKIIISTSRHLPLNLQYNLGKLMNPFK
>Mature_268_residues
MQVNSVQIKNATAIVTGASSGIGLAFASLLAQKGYNLLLIARNINKLNDLAKTLSTQYDTQCNVLSIDLSEENASKKVLE
YIITNNLNISVLINNAGFSGNYKFLEADWSQLSKELNVMSIAVTELCYLIAPLMEKNSWGRIINVSSGAAYLPPTQSLLY
TGLKSYVLNFSQSLDMELKPKGINVTALCPGFTRSEFHNTMGTNKQVSKVPNFLWQAPDQVALEGWHAVMKGHPVCIPGL
INKIIISTSRHLPLNLQYNLGKLMNPFK

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705855, Length=189, Percent_Identity=30.1587301587302, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI226371731, Length=183, Percent_Identity=30.0546448087432, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI4557649, Length=237, Percent_Identity=28.2700421940928, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI31542939, Length=196, Percent_Identity=28.0612244897959, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI32483357, Length=207, Percent_Identity=26.5700483091787, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI109715829, Length=197, Percent_Identity=29.4416243654822, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=24.2677824267782, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI166795268, Length=245, Percent_Identity=25.7142857142857, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=27.3255813953488, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI87082160, Length=192, Percent_Identity=29.6875, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI2367175, Length=210, Percent_Identity=32.8571428571429, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787335, Length=216, Percent_Identity=26.3888888888889, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI87082100, Length=199, Percent_Identity=26.1306532663317, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788459, Length=182, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787820, Length=221, Percent_Identity=24.4343891402715, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786701, Length=211, Percent_Identity=27.0142180094787, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787905, Length=190, Percent_Identity=27.8947368421053, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789208, Length=226, Percent_Identity=24.7787610619469, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=195, Percent_Identity=33.8461538461538, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562904, Length=239, Percent_Identity=28.4518828451883, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=196, Percent_Identity=29.5918367346939, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25152911, Length=214, Percent_Identity=29.4392523364486, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=202, Percent_Identity=29.2079207920792, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=224, Percent_Identity=22.7678571428571, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=211, Percent_Identity=28.9099526066351, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=197, Percent_Identity=27.9187817258883, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560176, Length=182, Percent_Identity=29.1208791208791, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=200, Percent_Identity=28, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=205, Percent_Identity=24.8780487804878, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=211, Percent_Identity=28.9099526066351, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=198, Percent_Identity=28.2828282828283, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=209, Percent_Identity=29.6650717703349, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=206, Percent_Identity=30.0970873786408, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=208, Percent_Identity=26.4423076923077, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI212646214, Length=191, Percent_Identity=27.7486910994764, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=224, Percent_Identity=28.125, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17559552, Length=191, Percent_Identity=27.2251308900524, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6319635, Length=182, Percent_Identity=31.8681318681319, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=199, Percent_Identity=29.6482412060301, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24640442, Length=186, Percent_Identity=36.0215053763441, Blast_Score=101, Evalue=7e-22,
Organism=Drosophila melanogaster, GI23397609, Length=195, Percent_Identity=31.2820512820513, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21357041, Length=200, Percent_Identity=30, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI28571526, Length=198, Percent_Identity=29.7979797979798, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24584752, Length=184, Percent_Identity=32.6086956521739, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21358495, Length=264, Percent_Identity=25.3787878787879, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI161076933, Length=183, Percent_Identity=27.8688524590164, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24584748, Length=183, Percent_Identity=27.8688524590164, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24584744, Length=185, Percent_Identity=29.1891891891892, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI28574402, Length=185, Percent_Identity=29.1891891891892, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24644339, Length=212, Percent_Identity=29.7169811320755, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24649181, Length=193, Percent_Identity=29.0155440414508, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI116007236, Length=200, Percent_Identity=25.5, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29467; Mature: 29467

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVNSVQIKNATAIVTGASSGIGLAFASLLAQKGYNLLLIARNINKLNDLAKTLSTQYDT
CCCCEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCC
QCNVLSIDLSEENASKKVLEYIITNNLNISVLINNAGFSGNYKFLEADWSQLSKELNVMS
CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHH
IAVTELCYLIAPLMEKNSWGRIINVSSGAAYLPPTQSLLYTGLKSYVLNFSQSLDMELKP
HHHHHHHHHHHHHHCCCCCCCEEEECCCCEECCCHHHHHHHHHHHHHHHHHHCCCCEECC
KGINVTALCPGFTRSEFHNTMGTNKQVSKVPNFLWQAPDQVALEGWHAVMKGHPVCIPGL
CCCEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEHHHH
INKIIISTSRHLPLNLQYNLGKLMNPFK
HHHHHHHCCCCCEEEEEECHHHHCCCCC
>Mature Secondary Structure
MQVNSVQIKNATAIVTGASSGIGLAFASLLAQKGYNLLLIARNINKLNDLAKTLSTQYDT
CCCCEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCC
QCNVLSIDLSEENASKKVLEYIITNNLNISVLINNAGFSGNYKFLEADWSQLSKELNVMS
CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHH
IAVTELCYLIAPLMEKNSWGRIINVSSGAAYLPPTQSLLYTGLKSYVLNFSQSLDMELKP
HHHHHHHHHHHHHHCCCCCCCEEEECCCCEECCCHHHHHHHHHHHHHHHHHHCCCCEECC
KGINVTALCPGFTRSEFHNTMGTNKQVSKVPNFLWQAPDQVALEGWHAVMKGHPVCIPGL
CCCEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEHHHH
INKIIISTSRHLPLNLQYNLGKLMNPFK
HHHHHHHCCCCCEEEEEECHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]