Click here to switch to the map view.

The map label for this gene is yccS [H]

Identifier: 50086278

GI number: 50086278

Start: 3199153

End: 3201303

Strand: Direct

Name: yccS [H]

Synonym: ACIAD3291

Alternate gene names: 50086278

Gene position: 3199153-3201303 (Clockwise)

Preceding gene: 50086277

Following gene: 50086280

Centisome position: 88.9

GC content: 40.35

Gene sequence:

>2151_bases
ATGAATAACCGCTTGAGATGGTTTAATCATTATAATTTTAATTCGACCACTGTTTATTGCTTGCAGATTTTTATTGTCTT
GTCAGGAACCACATTAGGATTACGTTACCTCGGACATCATGAACTGATCATTCCTGTTACTTTAGGCGCCATAGCGACCG
CACTGACAGATTTTGATGATCGCCTCAGTATTCGCCTACGTAATCTGGTTTATGTGAGCTTTCTATTTTTTGTCGTGAGT
AGTGTTCTAGAGTTTCTTTCGCCGTACCCTTTTCTATTGATCATCTATTTATCTTTATCCAGTGGTTTTCTGATTTTATT
GGGCTCACTCGGGCAGCGCTACGCCACCATTTCTTTTGGCACGATTTTACTGTCGATTTATACTTTATTCGGTTTGGGAG
AATATCAAGTTTGGTATCAACAACCGCTATATTTCGTTTATGGCGTGATCTGGTATGGGCTGACCTCGATTATTTTTTAT
ATGATCAAACCCACACTCGCAGTGCAAGATAATCTATCACAGATTTTTTCTGCGCTCGCCAAACTGTTAAATAGCAAATC
TAAATTATTTGATCCAGACAATCATGAAAATGTAGAACAGTTACTATTTGATTTATCCCTGGAAAATGCCCAGACCGTTC
AGCGCCTAAATACAGCCAAAGCCTCACTTCTGACACGGTTAAAAGCTTCGCGGGTCAATCAGAACAGTATTTACTGGTTA
CATCTTTATTTTGTGGCACAGGATATTCATGAACAGGTCAGTGCCAATTATCTTCATTATGAACAGATTCAGGATAATTT
TAGCCGTAGTGATCTGATTTTTCGTATTCAAAAAAATATCCGTTTGCAAGCGATCGCCTGTGAAACCTTGTGTCAGTGTA
TTTTGACTCATCGTCCCTACCAACCCGCACCAGAATTATCACAGGCACTTGATCAGCTTGAACGCTCAATGCAGGACTGG
ATTAGAATGAACCCTGACAATATTGAAGTGAAAAATCTTCGGCTCATTTTAAACAATCTGCATATTATTGATGATCAACT
GCATAACCTGAACGATATCCAGTACACCTATCCTGCCCGCTTTCAGCAGCATGTTGATAATCTAAATCTACTGGATGATG
ACATTCACGGGATTAAGGATCTATGGCTTAAATTTAGACAGCATCTTCATCCAACATCCGCATTATTTCGACATGCTGTG
CGGATTGCTTTTGTATTTGCCGCTGGCTCCCTGATCTCGCTTTTGCCCTTTGCAAAAAATGGCTATTGGATTTTACTCAC
GGGTTTATTTGTGTGTCAGGTAACTTATTTTGCGACCAAAAGTCGGCTTAAATTACGCACATTTGGCACCTTACTGGGTG
TAATTTTAGGGATTCCGATCCTGTATTTTGTACCCAGTGTCGAAGGTCAGCTCATGATCACGGTGATCTGTGGTGTATGT
TTTTTCTATTTACGCCAGAAGAAATATGCCCTTGCCACATCCATGGCAACCCTAATGGTATTGCTGATTTTTAATCTGAA
AGGATCTGGCTTTAATATCATTTTGCCACGAATGATGGATACTTTACTTGGCTGTGGTATTGCGTGGTTTGCCGTCAGTT
TTATCTGGCCTGACTGGAATTTTAGAAATATCTCAAACAATATTCGTAATAGCACACAAGCCAGTCTGGATTATTTCGAT
GCCGTGGTGCAGCAATATGACGCTGGACGAACCAACAGTATGGATTACCGTCGTACACGGCGTTTGGCACATAATGCCCA
GATCGAACTCTCTAGCATGATTTCAAGTTTAAGTGCCGAACCTTCGCCCAACCCGCAACTGATTCATTATGCATTTCGCT
ATTTGGTCTACAGCCATAGCCAATTGAGCTATATCTCTGCTTTGGGGAGTCATCGTGAAAAAATTGGAGATCAGTACATT
CTTGATTTAATGCGCTGGTGTCTAAATACGCTAAAACAGGTTCTTATAGAGCAACGGACATTATCTAAAACAGACATTAA
AATTCGTCTACAAGAAATTTACGATTTGGCTGCACGTGAATCCACATCCGAATATTTTATGCTGATTTTAAAGCAGATCA
GCCTACTGTTAGAAACACTCCCTGAACTGGTAACACTGCGTCGCCAACTCCTTGAAAAAGAGATTCGTTAA

Upstream 100 bases:

>100_bases
TTTTATTTAATTTCTTAAATCCTTTTAGCTGCTAGATTGACAGTGCCGTCAAAAAAGCTCACCCTAAATTTATAATTATT
CAGATTATGATCCTTAATTT

Downstream 100 bases:

>100_bases
TCCGTCGATATGTCTGGCGCTTTCCGTCCAGACATATCAGAGCTTCAAACAGATTAGAACTGATCATGTGTATGACGGAT
TGCCATTTCCTGTTTAAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 716; Mature: 716

Protein sequence:

>716_residues
MNNRLRWFNHYNFNSTTVYCLQIFIVLSGTTLGLRYLGHHELIIPVTLGAIATALTDFDDRLSIRLRNLVYVSFLFFVVS
SVLEFLSPYPFLLIIYLSLSSGFLILLGSLGQRYATISFGTILLSIYTLFGLGEYQVWYQQPLYFVYGVIWYGLTSIIFY
MIKPTLAVQDNLSQIFSALAKLLNSKSKLFDPDNHENVEQLLFDLSLENAQTVQRLNTAKASLLTRLKASRVNQNSIYWL
HLYFVAQDIHEQVSANYLHYEQIQDNFSRSDLIFRIQKNIRLQAIACETLCQCILTHRPYQPAPELSQALDQLERSMQDW
IRMNPDNIEVKNLRLILNNLHIIDDQLHNLNDIQYTYPARFQQHVDNLNLLDDDIHGIKDLWLKFRQHLHPTSALFRHAV
RIAFVFAAGSLISLLPFAKNGYWILLTGLFVCQVTYFATKSRLKLRTFGTLLGVILGIPILYFVPSVEGQLMITVICGVC
FFYLRQKKYALATSMATLMVLLIFNLKGSGFNIILPRMMDTLLGCGIAWFAVSFIWPDWNFRNISNNIRNSTQASLDYFD
AVVQQYDAGRTNSMDYRRTRRLAHNAQIELSSMISSLSAEPSPNPQLIHYAFRYLVYSHSQLSYISALGSHREKIGDQYI
LDLMRWCLNTLKQVLIEQRTLSKTDIKIRLQEIYDLAARESTSEYFMLILKQISLLLETLPELVTLRRQLLEKEIR

Sequences:

>Translated_716_residues
MNNRLRWFNHYNFNSTTVYCLQIFIVLSGTTLGLRYLGHHELIIPVTLGAIATALTDFDDRLSIRLRNLVYVSFLFFVVS
SVLEFLSPYPFLLIIYLSLSSGFLILLGSLGQRYATISFGTILLSIYTLFGLGEYQVWYQQPLYFVYGVIWYGLTSIIFY
MIKPTLAVQDNLSQIFSALAKLLNSKSKLFDPDNHENVEQLLFDLSLENAQTVQRLNTAKASLLTRLKASRVNQNSIYWL
HLYFVAQDIHEQVSANYLHYEQIQDNFSRSDLIFRIQKNIRLQAIACETLCQCILTHRPYQPAPELSQALDQLERSMQDW
IRMNPDNIEVKNLRLILNNLHIIDDQLHNLNDIQYTYPARFQQHVDNLNLLDDDIHGIKDLWLKFRQHLHPTSALFRHAV
RIAFVFAAGSLISLLPFAKNGYWILLTGLFVCQVTYFATKSRLKLRTFGTLLGVILGIPILYFVPSVEGQLMITVICGVC
FFYLRQKKYALATSMATLMVLLIFNLKGSGFNIILPRMMDTLLGCGIAWFAVSFIWPDWNFRNISNNIRNSTQASLDYFD
AVVQQYDAGRTNSMDYRRTRRLAHNAQIELSSMISSLSAEPSPNPQLIHYAFRYLVYSHSQLSYISALGSHREKIGDQYI
LDLMRWCLNTLKQVLIEQRTLSKTDIKIRLQEIYDLAARESTSEYFMLILKQISLLLETLPELVTLRRQLLEKEIR
>Mature_716_residues
MNNRLRWFNHYNFNSTTVYCLQIFIVLSGTTLGLRYLGHHELIIPVTLGAIATALTDFDDRLSIRLRNLVYVSFLFFVVS
SVLEFLSPYPFLLIIYLSLSSGFLILLGSLGQRYATISFGTILLSIYTLFGLGEYQVWYQQPLYFVYGVIWYGLTSIIFY
MIKPTLAVQDNLSQIFSALAKLLNSKSKLFDPDNHENVEQLLFDLSLENAQTVQRLNTAKASLLTRLKASRVNQNSIYWL
HLYFVAQDIHEQVSANYLHYEQIQDNFSRSDLIFRIQKNIRLQAIACETLCQCILTHRPYQPAPELSQALDQLERSMQDW
IRMNPDNIEVKNLRLILNNLHIIDDQLHNLNDIQYTYPARFQQHVDNLNLLDDDIHGIKDLWLKFRQHLHPTSALFRHAV
RIAFVFAAGSLISLLPFAKNGYWILLTGLFVCQVTYFATKSRLKLRTFGTLLGVILGIPILYFVPSVEGQLMITVICGVC
FFYLRQKKYALATSMATLMVLLIFNLKGSGFNIILPRMMDTLLGCGIAWFAVSFIWPDWNFRNISNNIRNSTQASLDYFD
AVVQQYDAGRTNSMDYRRTRRLAHNAQIELSSMISSLSAEPSPNPQLIHYAFRYLVYSHSQLSYISALGSHREKIGDQYI
LDLMRWCLNTLKQVLIEQRTLSKTDIKIRLQEIYDLAARESTSEYFMLILKQISLLLETLPELVTLRRQLLEKEIR

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yccS/yhfK family [H]

Homologues:

Organism=Escherichia coli, GI87081808, Length=715, Percent_Identity=44.0559440559441, Blast_Score=592, Evalue=1e-170,
Organism=Escherichia coli, GI87082248, Length=628, Percent_Identity=23.2484076433121, Blast_Score=105, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010019
- InterPro:   IPR010020 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 82872; Mature: 82872

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNRLRWFNHYNFNSTTVYCLQIFIVLSGTTLGLRYLGHHELIIPVTLGAIATALTDFDD
CCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEHHHHHHHHHHHCCCH
RLSIRLRNLVYVSFLFFVVSSVLEFLSPYPFLLIIYLSLSSGFLILLGSLGQRYATISFG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHH
TILLSIYTLFGLGEYQVWYQQPLYFVYGVIWYGLTSIIFYMIKPTLAVQDNLSQIFSALA
HHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
KLLNSKSKLFDPDNHENVEQLLFDLSLENAQTVQRLNTAKASLLTRLKASRVNQNSIYWL
HHHCCHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
HLYFVAQDIHEQVSANYLHYEQIQDNFSRSDLIFRIQKNIRLQAIACETLCQCILTHRPY
HHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHEEECCCCEEHHHHHHHHHHHHHHCCCC
QPAPELSQALDQLERSMQDWIRMNPDNIEVKNLRLILNNLHIIDDQLHNLNDIQYTYPAR
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEECCHH
FQQHVDNLNLLDDDIHGIKDLWLKFRQHLHPTSALFRHAVRIAFVFAAGSLISLLPFAKN
HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GYWILLTGLFVCQVTYFATKSRLKLRTFGTLLGVILGIPILYFVPSVEGQLMITVICGVC
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
FFYLRQKKYALATSMATLMVLLIFNLKGSGFNIILPRMMDTLLGCGIAWFAVSFIWPDWN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
FRNISNNIRNSTQASLDYFDAVVQQYDAGRTNSMDYRRTRRLAHNAQIELSSMISSLSAE
CHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC
PSPNPQLIHYAFRYLVYSHSQLSYISALGSHREKIGDQYILDLMRWCLNTLKQVLIEQRT
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSKTDIKIRLQEIYDLAARESTSEYFMLILKQISLLLETLPELVTLRRQLLEKEIR
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNNRLRWFNHYNFNSTTVYCLQIFIVLSGTTLGLRYLGHHELIIPVTLGAIATALTDFDD
CCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEHHHHHHHHHHHCCCH
RLSIRLRNLVYVSFLFFVVSSVLEFLSPYPFLLIIYLSLSSGFLILLGSLGQRYATISFG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHH
TILLSIYTLFGLGEYQVWYQQPLYFVYGVIWYGLTSIIFYMIKPTLAVQDNLSQIFSALA
HHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
KLLNSKSKLFDPDNHENVEQLLFDLSLENAQTVQRLNTAKASLLTRLKASRVNQNSIYWL
HHHCCHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
HLYFVAQDIHEQVSANYLHYEQIQDNFSRSDLIFRIQKNIRLQAIACETLCQCILTHRPY
HHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHEEECCCCEEHHHHHHHHHHHHHHCCCC
QPAPELSQALDQLERSMQDWIRMNPDNIEVKNLRLILNNLHIIDDQLHNLNDIQYTYPAR
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEECCHH
FQQHVDNLNLLDDDIHGIKDLWLKFRQHLHPTSALFRHAVRIAFVFAAGSLISLLPFAKN
HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GYWILLTGLFVCQVTYFATKSRLKLRTFGTLLGVILGIPILYFVPSVEGQLMITVICGVC
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
FFYLRQKKYALATSMATLMVLLIFNLKGSGFNIILPRMMDTLLGCGIAWFAVSFIWPDWN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
FRNISNNIRNSTQASLDYFDAVVQQYDAGRTNSMDYRRTRRLAHNAQIELSSMISSLSAE
CHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC
PSPNPQLIHYAFRYLVYSHSQLSYISALGSHREKIGDQYILDLMRWCLNTLKQVLIEQRT
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSKTDIKIRLQEIYDLAARESTSEYFMLILKQISLLLETLPELVTLRRQLLEKEIR
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]