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The map label for this gene is ybdA [C]

Identifier: 50086061

GI number: 50086061

Start: 2976484

End: 2977746

Strand: Direct

Name: ybdA [C]

Synonym: ACIAD3048

Alternate gene names: 50086061

Gene position: 2976484-2977746 (Clockwise)

Preceding gene: 50086056

Following gene: 50086062

Centisome position: 82.71

GC content: 42.52

Gene sequence:

>1263_bases
ATGATACTTATGAAACCTAAGCAGGACGCTTTTGCCGCTCTCCGATATCGTGATTTCTCCATTATTACAGTCAATCAGTT
TTGCCTGACACTTGCGATTCTGATTCAGGAGATTATTGTCGCCTATTCACTCTATCAAATTACCAAGGATCCTCTCACCT
TAGGATTAATTGGACTTGCAGAAGCCATTCCATTTATCAGTCTTTCACTTTGGGGCGGCTATGTTGCCGACAGGTTTAAT
AAACAATTGATTATGAAAATCTGTCTGTTTTTTTCCTTTCCATTACCTTTGGTACTTTGGGGATTATTTCACCTTTATGG
CCTTGGACAGATTGGTGTCCATACGCTGGCGCTTGGAATTTACGCAGTTATTTTTTGCTTCGGTGTGATTCGTGGCTTTT
ATAGTCCATCAGCGACCTCACTTAAGCCTTTTCTGATTCCTAGAGCGCTTTATGCCAATGGCGCCACATGGACCACCATC
GGCTGGCAAAGTGGGGTTATTCTAGGCCCTATGCTAGGCGGATTTATGCTGGCATTTTTAGGCCGTGAAACCAGTCTTTT
TAGCGTCTCCATTTTGCTCTTCATCTGTTTTTGTCTCATTCTCTTATTGAGTAAACGAACATTTCCAAGTATCGAACATG
AAAATGTCTGGTCAAGTCTTGGCGATGGCTTTCGTTTTATCTGGAAAACCAAGATTGTACTTTGGGCAATCTCACTGGAT
CTGGTTTCAGTTCTATTTGGTGGCGTGATCGCATTGTTGCCTATTTTTGCAGAAGATATACTGAAAGTTGGACCCGAAGG
TTTAGGCTATTTAAGAGCAGCTCCATCAATTGGCGCATTATTGACAATGATCGCACTGACCAAATTTCCTCCCACCCATC
ATGCTTGGCGTAATATGCTACTTGCGGTTGCTGGATTTGGTGTATTTACAATTATTTTTGCGTTTTCAAGTCATATGTGG
CTATCACTATTTGCTTTAGCCATGACAGGAGCATGTGACAGTATTTCGGTGGTTGTACGTCAAACGATTTTGCAAATTTT
TCCTCCAGAAAACATGCGTGGTCGCGTAGCTGCGGTCAATGGTATGTTCGTCTCTAGCAGTAATGAACTGGGTGCATTTG
AATCTGGGCTGGCCGCAAAGTATCTGGGAACCATTACAGCAACGCTACTTGGCGGATGCATGACTTTGGGCGTCGTCGTG
CTCAGTTGGAGCAAAACTAAAGAGCTATTTAAAGTCGATATTACTAAAAGTTCAGAACATTAA

Upstream 100 bases:

>100_bases
TCCGATCATTTACTTGAGGAAAAATTTCATCATAAAAAACCAAAAACTGATCATTATTTTTAAGGAACTGCGCTTATAAT
TAGGCAAATATTCTCAATAT

Downstream 100 bases:

>100_bases
GCATTTTCTTGTTGCGAGTATTCTTTAAACAAGGAATACTTTCAGGAGTTATATTTTTATTTTTTTCCATCACTCATTCT
CAAGAACAACGTATGAAAGC

Product: transporter

Products: NA

Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; Facilitator Superfamily Transporter; MFS Permease; DrugProton Antiporter; Transporter Facilitator Family; Transmembrane Protein; Permease Of Facilitator Superfamily; Facilitator Superfamily Transporter Permease; MFS Family Transporter; Membrane Transporter; Facilitator Superfamily; Macrolide-Efflux Protein; Integral Membrane Protein; Facilitator MFS1 Protein; Permease Protein; Drug Resistance Efflux Protein; Permease Facilitator Superfamily; Permeases Of Facilitator Superfamily; Integral Membrane Protein MFS Transporter; Siderophore Export Protein; Permease; Permease MDR ; Facilitator Superfamily Transmembrane Transporter; Membrame Protein; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; DrugH+ Antiporter; Facilitator Family Transporter; Multidrug ABC Transporter; Facilitator Superfamily Multidrug Resistance Protein; Drug Proton Antiporter

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MILMKPKQDAFAALRYRDFSIITVNQFCLTLAILIQEIIVAYSLYQITKDPLTLGLIGLAEAIPFISLSLWGGYVADRFN
KQLIMKICLFFSFPLPLVLWGLFHLYGLGQIGVHTLALGIYAVIFCFGVIRGFYSPSATSLKPFLIPRALYANGATWTTI
GWQSGVILGPMLGGFMLAFLGRETSLFSVSILLFICFCLILLLSKRTFPSIEHENVWSSLGDGFRFIWKTKIVLWAISLD
LVSVLFGGVIALLPIFAEDILKVGPEGLGYLRAAPSIGALLTMIALTKFPPTHHAWRNMLLAVAGFGVFTIIFAFSSHMW
LSLFALAMTGACDSISVVVRQTILQIFPPENMRGRVAAVNGMFVSSSNELGAFESGLAAKYLGTITATLLGGCMTLGVVV
LSWSKTKELFKVDITKSSEH

Sequences:

>Translated_420_residues
MILMKPKQDAFAALRYRDFSIITVNQFCLTLAILIQEIIVAYSLYQITKDPLTLGLIGLAEAIPFISLSLWGGYVADRFN
KQLIMKICLFFSFPLPLVLWGLFHLYGLGQIGVHTLALGIYAVIFCFGVIRGFYSPSATSLKPFLIPRALYANGATWTTI
GWQSGVILGPMLGGFMLAFLGRETSLFSVSILLFICFCLILLLSKRTFPSIEHENVWSSLGDGFRFIWKTKIVLWAISLD
LVSVLFGGVIALLPIFAEDILKVGPEGLGYLRAAPSIGALLTMIALTKFPPTHHAWRNMLLAVAGFGVFTIIFAFSSHMW
LSLFALAMTGACDSISVVVRQTILQIFPPENMRGRVAAVNGMFVSSSNELGAFESGLAAKYLGTITATLLGGCMTLGVVV
LSWSKTKELFKVDITKSSEH
>Mature_420_residues
MILMKPKQDAFAALRYRDFSIITVNQFCLTLAILIQEIIVAYSLYQITKDPLTLGLIGLAEAIPFISLSLWGGYVADRFN
KQLIMKICLFFSFPLPLVLWGLFHLYGLGQIGVHTLALGIYAVIFCFGVIRGFYSPSATSLKPFLIPRALYANGATWTTI
GWQSGVILGPMLGGFMLAFLGRETSLFSVSILLFICFCLILLLSKRTFPSIEHENVWSSLGDGFRFIWKTKIVLWAISLD
LVSVLFGGVIALLPIFAEDILKVGPEGLGYLRAAPSIGALLTMIALTKFPPTHHAWRNMLLAVAGFGVFTIIFAFSSHMW
LSLFALAMTGACDSISVVVRQTILQIFPPENMRGRVAAVNGMFVSSSNELGAFESGLAAKYLGTITATLLGGCMTLGVVV
LSWSKTKELFKVDITKSSEH

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46040; Mature: 46040

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILMKPKQDAFAALRYRDFSIITVNQFCLTLAILIQEIIVAYSLYQITKDPLTLGLIGLA
CEECCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
EAIPFISLSLWGGYVADRFNKQLIMKICLFFSFPLPLVLWGLFHLYGLGQIGVHTLALGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHH
YAVIFCFGVIRGFYSPSATSLKPFLIPRALYANGATWTTIGWQSGVILGPMLGGFMLAFL
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH
GRETSLFSVSILLFICFCLILLLSKRTFPSIEHENVWSSLGDGFRFIWKTKIVLWAISLD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LVSVLFGGVIALLPIFAEDILKVGPEGLGYLRAAPSIGALLTMIALTKFPPTHHAWRNML
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHH
LAVAGFGVFTIIFAFSSHMWLSLFALAMTGACDSISVVVRQTILQIFPPENMRGRVAAVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEE
GMFVSSSNELGAFESGLAAKYLGTITATLLGGCMTLGVVVLSWSKTKELFKVDITKSSEH
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCHHHEEEEECCCCCC
>Mature Secondary Structure
MILMKPKQDAFAALRYRDFSIITVNQFCLTLAILIQEIIVAYSLYQITKDPLTLGLIGLA
CEECCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
EAIPFISLSLWGGYVADRFNKQLIMKICLFFSFPLPLVLWGLFHLYGLGQIGVHTLALGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHH
YAVIFCFGVIRGFYSPSATSLKPFLIPRALYANGATWTTIGWQSGVILGPMLGGFMLAFL
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH
GRETSLFSVSILLFICFCLILLLSKRTFPSIEHENVWSSLGDGFRFIWKTKIVLWAISLD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LVSVLFGGVIALLPIFAEDILKVGPEGLGYLRAAPSIGALLTMIALTKFPPTHHAWRNML
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHH
LAVAGFGVFTIIFAFSSHMWLSLFALAMTGACDSISVVVRQTILQIFPPENMRGRVAAVN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEE
GMFVSSSNELGAFESGLAAKYLGTITATLLGGCMTLGVVVLSWSKTKELFKVDITKSSEH
EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCHHHEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA